PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020677472.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 324aa MW: 36494.2 Da PI: 7.5004

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020677472.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.7	2e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d++++ G++ +W+ +r g++R++k+c++rw +yl XP_020677472.1 14 KGPWTPEEDQKLIDYIQKQGSHgSWRHLPRIAGLNRCGKSCRLRWTNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	56.6	5.8e-18	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++l+++++ +lG++ W++I+ +++ gRt++++k++w+++l XP_020677472.1 68 RGKFSEEEEKLIINLHSMLGNK-WSLISTKLP-GRTDNEIKNYWNTHL 113 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence
MVRSPCREET GLKKGPWTPE EDQKLIDYIQ KQGSHGSWRH LPRIAGLNRC GKSCRLRWTN 60 YLRPDIKRGK FSEEEEKLII NLHSMLGNKW SLISTKLPGR TDNEIKNYWN THLKKKLLLM 120 GIDPVTHRRR TDLELLANFP KLLSSSSNSC SLINPLMENT LGLPTDTVQL ARIQIMQALL 180 QVLLKASSFS SSSSNPNAYS NLVLNNLLSS SLPPLQTFSD SSNSSSLPPG TSAFGESVQT 240 PPSYQDFAAQ NSENISKQLL FYSNSNNMLE PSENISVDQK QDQIDLNETS ATKSISTRSL 300 DALNLSDLDD SDLSWKDFLD QIYW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	5e-81	MYB family protein