PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020677583.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family GRAS
Protein Properties Length: 453aa    MW: 49253.7 Da    PI: 5.9799
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020677583.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS325.69.6e-100684292374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lLl+cAe v+ ++l+ a +lL ++  l+sp g++ +R+aayf  AL+ar+++s  + y+ lp ++ +   + +   +++l++ ++P++kfsh+
  XP_020677583.1  68 LSLLLQCAESVAVDNLSDALTLLPEITSLSSPFGSSPERVAAYFSDALRARILSSYLSSYSPLPLKTLTV--THRIPRSFHLLNSLTPLIKFSHF 160
                     689***************************************************9999999999999984..4444568999************* PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl.. 189
                     t NqaI +++++ +r+Hi+Dfdi+qGlQWp L++ LasRp++  s+RiTg+g+    +++ le+tg+rLa+fA++l++pf+f++l + +++dl  
  XP_020677583.1 161 TSNQAIFQSIHSFSRLHIVDFDIMQGLQWPGLFHILASRPRPIESIRITGIGP----DSDLLEATGRRLADFAASLNLPFQFTPL-EGKIADLat 250
                     *****************************************************....9**************************6.667777734 PP

            GRAS 190 eleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseer 282
                     ++ ++r +   Ea++V++    h l+d ++s         +++ sl+P++++vveq++ + + + Fl rf+eal+yysalfd++  + +   eer
  XP_020677583.1 251 DFTSFRHRDpAEATVVHWTQ--HCLYDVTGSDLA----AAQFLLSLRPRLFTVVEQDLGRgSCGGFLGRFVEALHYYSALFDAIGDG-GGGGEER 338
                     6667766557********99..777766777666....6678889**************97778********************877.6888*** PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                       vEr +lg ei+n+va  g +r+ + + +e+W + l+++GF+pv+l    a+qa+lll +v+++gy++ ee g l lgWkd +L+++SaWr
  XP_020677583.1 339 WEVERGVLGGEIRNIVAVGGPKRTGEVR-VERWGDELRRVGFRPVSLAGCPAAQASLLLGMVPWKGYTLAEEGGRLKLGWKDLSLLTASAWR 429
                     **********************998887.9*************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    
MLQSLLPQSP INPTATSSSE AAPVTSKRSS SPSSSDDPRP LKHPNLDIST APPAADSPEI  60
ESRGLRLLSL LLQCAESVAV DNLSDALTLL PEITSLSSPF GSSPERVAAY FSDALRARIL  120
SSYLSSYSPL PLKTLTVTHR IPRSFHLLNS LTPLIKFSHF TSNQAIFQSI HSFSRLHIVD  180
FDIMQGLQWP GLFHILASRP RPIESIRITG IGPDSDLLEA TGRRLADFAA SLNLPFQFTP  240
LEGKIADLAT DFTSFRHRDP AEATVVHWTQ HCLYDVTGSD LAAAQFLLSL RPRLFTVVEQ  300
DLGRGSCGGF LGRFVEALHY YSALFDAIGD GGGGGEERWE VERGVLGGEI RNIVAVGGPK  360
RTGEVRVERW GDELRRVGFR PVSLAGCPAA QASLLLGMVP WKGYTLAEEG GRLKLGWKDL  420
SLLTASAWRP ANSTGEEEED GVEEWDKSGR ASL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-133GRAS family protein