PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020677589.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family C3H
Protein Properties Length: 244aa    MW: 27318.1 Da    PI: 7.5493
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020677589.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.61.5e-11174198226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ktelC+ + ++G+C+y +rC+FaHg
  XP_020677589.1 174 KTELCNKWGEMGICPYAERCQFAHG 198
                     9***********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MAFSANSGDQ FESQKQFMIL ELQRLIESYN DAFWQLHHTI LHVDSLRKEH LLLSAENLKL  60
LSLIQEKESS SASPITEILP ASSTIVTGFD GKLQPANLES DTVECIPDPT RNILPKCISI  120
RSAGFLAGRH LSPRGRGMSS TRTIQPLRLR LPVASSIQDN EEVEVEAYSQ GTTKTELCNK  180
WGEMGICPYA ERCQFAHGLE ELRPVIRHPR YKTQFCRMLS SGGGCPYGHR CHFRHAAPPA  240
YHGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-42C3H family protein