PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020677691.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 316aa MW: 34597.1 Da PI: 9.795

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020677691.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59	1.1e-18	12	57	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++v ++G ++W++I++ ++ gR++k+c++rw + XP_020677691.1 12 KGPWSPEEDEMLQRLVVKHGARNWSLISKSIP-GRSGKSCRLRWCNQ 57 79****************************.*********985 PP
2	Myb_DNA-binding	55	1.9e-17	66	108	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd ++ a++++G++ W+tIar ++ gRt++ +k++w++ XP_020677691.1 66 PFTPEEDRTIISAHQRFGNK-WATIARLLN-GRTDNAIKNHWNST 108 89****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence
MAARGRDMDR IKGPWSPEED EMLQRLVVKH GARNWSLISK SIPGRSGKSC RLRWCNQLSP 60 TVEHRPFTPE EDRTIISAHQ RFGNKWATIA RLLNGRTDNA IKNHWNSTLK RKYSGAAMEE 120 EGRSLKRSNS AGLSFSPGSP SSSDVSDSSH HSHPLMTPPP MVTPVYRPVP RAGCIVPTQL 180 PPAIDTAAAS NSSGSGSNLI PDPVTSLTLS LPGLSSDQSE ASDHRHRQNQ TDLLHLAPPS 240 EPEKKPLHAA SAISAPTTAS AFPFSTELLA VMQEMIRQEV RNYLSGMELS EAMSVNPPHE 300 SLRNNVMKRI GIAKID

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67300.1	5e-65	MYB family protein