PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020677993.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Protein Properties

Length: 178aa MW: 19931.2 Da PI: 8.2867

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020677993.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	48.9	1.2e-15	63	154	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f +v+ s+v ++ l +pkkf + +++s+ ++ + ++W k+ + +++ v+++GWk+Fv +n+Lk gD +vF+l++++e + +v+ XP_020677993.1 63 FTSVMGESSVRSQYFLKIPKKFR-PYL--PPSSTRIV-LCCREKEWFAKY--KVYKNVKVIREGWKQFVVDNDLKIGDGCVFELMNDKELKIRVQ 151 677888899999999*****6.663..44665555.55699***..9999999**********************99*99999 PP EE- CS B3 96 vfr 98 +++ XP_020677993.1 152 ILN 154 986 PP

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence
MAGALPCCSE EEVCGSVGSC PKKCVGCASC QNEPACKEPN NLTEHNAATL KDKIVPLEGK 60 PYFTSVMGES SVRSQYFLKI PKKFRPYLPP SSTRIVLCCR EKEWFAKYKV YKNVKVIREG 120 WKQFVVDNDL KIGDGCVFEL MNDKELKIRV QILNGELPAT KSTCFTVGRN IDNPILIE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	1e-09	B3 family protein