PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020678007.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Trihelix

Protein Properties

Length: 593aa MW: 64862.4 Da PI: 6.7136

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020678007.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	44.5	4.2e-14	208	296	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +L++a +e+ +l+rg+l++ +We+v++ + ++++ ++ +qCk+k +nl+kryk + ++ +++ s ++s++ +f+++e XP_020678007.1 208 EWSDSAIGCLLDAFTEKYIQLNRGNLRGRDWEDVAATVsercEKQKSGKTVEQCKNKVDNLKKRYKVECQRLSSG-SIAVSHWLWFKKME 296 5******************************99888776688889999********************9.56667******8 PP

Sequence ? help Back to Top
Protein Sequence Length: 593 aa Download sequence
MASCDDDFSL LGDEVHSHHP HHQQQRQDSE SVAAGAAAGV LNFSTHRYVS KANVPIHSRS 60 LVFNNIIRKK VPIGPVGDDQ DQVGYAEAFV PTDVNTQSHC FADDDPVSNP FEPLHPREDD 120 GVDGDNSPDR RCSAAAAAAV ASVSHFHYQQ QQQQQQPLEA SHAEKKRRDR DELSDEESPY 180 GYNMSNKRSR SSSVAPSSSG DYRKDREEWS DSAIGCLLDA FTEKYIQLNR GNLRGRDWED 240 VAATVSERCE KQKSGKTVEQ CKNKVDNLKK RYKVECQRLS SGSIAVSHWL WFKKMEQIVG 300 SSSSSKTAVD DDKAAALGDS CPASRQLKRY PGTSPGSSSL TSNIKLKSLP NPRWKRAVLK 360 ISGSALAGTG PQNVDPKVMM LIAKEVAMAS RVGVEVAIVV GFRNFFCGDA WVAATDTDRT 420 TLYQVGMMAS TMNALLLQAS FEKIGIESRV QTAFMMQEIA DLYIRQRAIR HLEKGRIVIF 480 GGIGTGSGSS LFSTDTAAAL RASEINADAV LKGTTSDGAY ICHSRNESST FEHISFRDLA 540 NRGFTSMDMT AISFCEESNI PVVLFNLLEP GNISRALCGD QVGTLIDQSG RIS

Sequence ? help Back to Top

Protein Sequence Length: 593 aa Download sequence

MASCDDDFSL LGDEVHSHHP HHQQQRQDSE SVAAGAAAGV LNFSTHRYVS KANVPIHSRS  60
LVFNNIIRKK VPIGPVGDDQ DQVGYAEAFV PTDVNTQSHC FADDDPVSNP FEPLHPREDD  120
GVDGDNSPDR RCSAAAAAAV ASVSHFHYQQ QQQQQQPLEA SHAEKKRRDR DELSDEESPY  180
GYNMSNKRSR SSSVAPSSSG DYRKDREEWS DSAIGCLLDA FTEKYIQLNR GNLRGRDWED  240
VAATVSERCE KQKSGKTVEQ CKNKVDNLKK RYKVECQRLS SGSIAVSHWL WFKKMEQIVG  300
SSSSSKTAVD DDKAAALGDS CPASRQLKRY PGTSPGSSSL TSNIKLKSLP NPRWKRAVLK  360
ISGSALAGTG PQNVDPKVMM LIAKEVAMAS RVGVEVAIVV GFRNFFCGDA WVAATDTDRT  420
TLYQVGMMAS TMNALLLQAS FEKIGIESRV QTAFMMQEIA DLYIRQRAIR HLEKGRIVIF  480
GGIGTGSGSS LFSTDTAAAL RASEINADAV LKGTTSDGAY ICHSRNESST FEHISFRDLA  540
NRGFTSMDMT AISFCEESNI PVVLFNLLEP GNISRALCGD QVGTLIDQSG RIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	1e-174	Trihelix family protein