PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020678119.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 381aa MW: 42495.8 Da PI: 8.4997

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020678119.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.7	1e-05	77	99	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_020678119.1 77 FVCEICNKGFQRDQNLQLHRRGH 99 89*******************88 PP
2	zf-C2H2	11.2	0.0011	154	176	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H +t+ XP_020678119.1 154 WKCERCSKNYAVHSDWKAHVKTC 176 58*******************98 PP
3	zf-C2H2	10.6	0.0017	184	202	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsrk+++ +H + XP_020678119.1 184 DCGTIFSRKDSFITHRAFC 202 8**************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MFPSAVMSNS TSISEEASTS LETRAHIDFN KLTSLLSPSS SHQNQENKKK RSQPGNPDPE 60 AEVVALSPNT LMTTNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWRLRQRSG KEAARKRVYV 120 CPEQTCIHHH PSRALGDLTG IKKHFCRKHG EKKWKCERCS KNYAVHSDWK AHVKTCGSRE 180 YRCDCGTIFS RKDSFITHRA FCDALAEESA RLGSNSILSD TTVLSTLLPQ PPFTSFTNWY 240 PSSNTNPNPT FNNTTLPFHL QPDEPPHTFH PYFSNHHLVL PPTFSTIVSA TALLQGASSM 300 GPLPATTSTV MTATLDTGEI SMCRSDGKRL TRDFLGVVSG DVAEEDEFLP LSGLGVDPVT 360 SSRYGHSVDH SKTLPKAWRD C

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MFPSAVMSNS TSISEEASTS LETRAHIDFN KLTSLLSPSS SHQNQENKKK RSQPGNPDPE  60
AEVVALSPNT LMTTNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWRLRQRSG KEAARKRVYV  120
CPEQTCIHHH PSRALGDLTG IKKHFCRKHG EKKWKCERCS KNYAVHSDWK AHVKTCGSRE  180
YRCDCGTIFS RKDSFITHRA FCDALAEESA RLGSNSILSD TTVLSTLLPQ PPFTSFTNWY  240
PSSNTNPNPT FNNTTLPFHL QPDEPPHTFH PYFSNHHLVL PPTFSTIVSA TALLQGASSM  300
GPLPATTSTV MTATLDTGEI SMCRSDGKRL TRDFLGVVSG DVAEEDEFLP LSGLGVDPVT  360
SSRYGHSVDH SKTLPKAWRD C

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-111	C2H2 family protein