PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020678350.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family C2H2
Protein Properties Length: 206aa    MW: 21881.7 Da    PI: 7.7009
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020678350.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00038184200319
                     ETTTTEEESSHHHHHHH CS
         zf-C2H2   3 CpdCgksFsrksnLkrH 19 
                     C +Cg+ F+ +  L+ H
  XP_020678350.1 184 CYYCGEEFKKWQALEDH 200
                     ***************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    
MTGIWFAIKK SLQCKSEAGQ VHEPERKGKG IHLNYTTKKK TSPWCSSCSP SVTILKDVIH  60
GSHVPPDLPM TSSCSPRSVG SSDLVHPLTH EVLASVSGNE VKIAACHGGG GFGSYSCGGG  120
PLVDHGLMGR GRAGIQNCSA LGEEGMAACS RRKKDKVSYS FSGGIEINEG QEIEANGSYG  180
ALACYYCGEE FKKWQALEDH HVCNHA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151156RRKKDK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-19C2H2 family protein