PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020678472.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

YABBY

Protein Properties

Length: 185aa MW: 20705.2 Da PI: 6.5021

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020678472.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	52.9	1.5e-16	1	45	1	45
YABBY 1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsl 45 +d+ ssse++Cyv+C++Cn +lav+vP + ++++vtv+CGhC ++ XP_020678472.1 1 MDLSSSSEKLCYVHCSHCNIVLAVEVPCSRMMETVTVKCGHCNNI 45 57889*************************************997 PP
2	YABBY	81.1	3.4e-25	69	136	95	163
YABBY 95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163 ++s s+ + e+ p++ppv +PP k+q+ P+ayn f+++eiqrika+ P+i+h eafs+a+knWa + XP_020678472.1 69 QQSD-ASSSTSIEQKPEAPPVAKPPKKKQKQPTAYNVFVRQEIQRIKAEMPEITHTEAFSMASKNWARY 136 2333.22556667788999************************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence
MDLSSSSEKL CYVHCSHCNI VLAVEVPCSR MMETVTVKCG HCNNISYISP EPKPNSQYFD 60 YQMDFTMGQQ SDASSSTSIE QKPEAPPVAK PPKKKQKQPT AYNVFVRQEI QRIKAEMPEI 120 THTEAFSMAS KNWARYGGPL NYGLNPLNTI SDDNESVESV SIKHESGNGS AEESYGGFRQ 180 MKRHD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.1	5e-29	YABBY family protein