PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020678490.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 561aa MW: 63988.2 Da PI: 6.7121

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020678490.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.0005	532	555	2	23
EETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt..H 23 +C+ Cg+ F ++ L +H+++ H XP_020678490.1 532 SCETCGEIFDSRNKLFSHLNKtgH 555 6******************98666 PP

Sequence ? help Back to Top
Protein Sequence Length: 561 aa Download sequence
MAEQLKKRCL YDVLSVSRDC SQEEIRSAYK RLALQLHPDK LAQSGATNGA GDATAAFQEL 60 LHAYEVLSDP KERAWYDSHR SQILFSDPSS ASKSRSSFFD LDLFSFFTKS VYSGYTDSGK 120 GFFKVYGDVF AKIYAQELNF AEKLGFPSDA VAPAPLIGNL DSPYSQVTAF YSYWLGYSTV 180 MDFAWVDEYD SFAGPNRKAR RLMEEENKKV RKKAKREHND AVRGLAAFVK KRDKRVLDMQ 240 MKKNEEEEKR RAEERERKKE EERKKKERAM LYQEPDWAKN DLEESKMIWS DDDDDKRKKK 300 GKGEVEMYCV VCNKKFKSEK QWKNHEQSKK HREKVAELRT AFDDEDEALK DVSQEGLCVS 360 FDYEPLAEDN ESSESDADKF SEAFKDGLTL KEEGDDNGNL NADDLPRNEQ VAVPDTDNDN 420 GIGNVTEYHE LKKHRNCRNR RAKKGIVRED VVRDTGGARE VHESNVGHLN EISSLVQEDS 480 EITKGDQVVG GTLKFKKQQI DGKGSAREDT IHSKSSSKGK KQKAAAKAPS NSCETCGEIF 540 DSRNKLFSHL NKTGHAMLKS W

Sequence ? help Back to Top

Protein Sequence Length: 561 aa Download sequence

MAEQLKKRCL YDVLSVSRDC SQEEIRSAYK RLALQLHPDK LAQSGATNGA GDATAAFQEL  60
LHAYEVLSDP KERAWYDSHR SQILFSDPSS ASKSRSSFFD LDLFSFFTKS VYSGYTDSGK  120
GFFKVYGDVF AKIYAQELNF AEKLGFPSDA VAPAPLIGNL DSPYSQVTAF YSYWLGYSTV  180
MDFAWVDEYD SFAGPNRKAR RLMEEENKKV RKKAKREHND AVRGLAAFVK KRDKRVLDMQ  240
MKKNEEEEKR RAEERERKKE EERKKKERAM LYQEPDWAKN DLEESKMIWS DDDDDKRKKK  300
GKGEVEMYCV VCNKKFKSEK QWKNHEQSKK HREKVAELRT AFDDEDEALK DVSQEGLCVS  360
FDYEPLAEDN ESSESDADKF SEAFKDGLTL KEEGDDNGNL NADDLPRNEQ VAVPDTDNDN  420
GIGNVTEYHE LKKHRNCRNR RAKKGIVRED VVRDTGGARE VHESNVGHLN EISSLVQEDS  480
EITKGDQVVG GTLKFKKQQI DGKGSAREDT IHSKSSSKGK KQKAAAKAPS NSCETCGEIF  540
DSRNKLFSHL NKTGHAMLKS W

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	197	234	RKARRLMEEENKKVRKKAKREHNDAVRGLAAFVKKRDK
2	208	216	KKVRKKAKR
3	249	266	KRRAEERERKKEEERKKK
4	263	300	RKARRLMEEENKKVRKKAKREHNDAVRGLAAFVKKRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74250.1	1e-122	C2H2 family protein