PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020678695.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Protein Properties

Length: 232aa MW: 26466.2 Da PI: 9.2223

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020678695.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	40.1	6.3e-13	136	225	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k ++ s+v+ +l l+k+f+++h +++++ tl de+ + e + k++ l++GW++F+ a++L +gD +vF+l++++ f +v XP_020678695.1 136 FVKPMLISHVTGGFWLGLSKSFCSSHL--PHRDTWFTLIDEHDDESETLYLAPKNG----LSAGWRGFAIAHELVDGDALVFHLIKSTAF--KVY 222 8999********************5..346779****9999999555555....9**********************98888..777 PP EE- CS B3 96 vfr 98 ++r XP_020678695.1 223 IIR 225 665 PP

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence
MATATATETE TITYEEVRRR KLEENKKKLE ELKLGHLTIA LREAVSPKTS PAKPLKRKAQ 60 SLPGEIVIRR RSSRIANLPE HSYKEEPSFE IIVRPRRIFK RAGLENRVYA SDEARDYATE 120 KAEELQSQLD PKYPSFVKPM LISHVTGGFW LGLSKSFCSS HLPHRDTWFT LIDEHDDESE 180 TLYLAPKNGL SAGWRGFAIA HELVDGDALV FHLIKSTAFK VYIIRCSGYY SS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-61	B3 family protein