PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020678741.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HB-other

Protein Properties

Length: 1621aa MW: 181632 Da PI: 4.8595

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020678741.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	45.8	1.1e-14	25	79	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++q+++Le+++ ++ +s+++r+eLA+k++L+ r +++WF N+R + k+ XP_020678741.1 25 KRKMKTPSQIDVLEKAYTVSSRLSEQMRQELAQKTELSSREISMWFANKRFQGKQ 79 89999*********************************************98875 PP

Sequence ? help Back to Top
Protein Sequence Length: 1621 aa Download sequence
MEFGEGGGGG SPRVAVDGVP KQQAKRKMKT PSQIDVLEKA YTVSSRLSEQ MRQELAQKTE 60 LSSREISMWF ANKRFQGKQA HLPREPKKEE FSPLPLHSSP NGGGSGFVLA ACHFMDSDTN 120 ESSIREVCSK LTRPKPAAPQ LKKKTQLQHM MSQQQPSHEA LDPLVLTFME RKLGGRLRED 180 GPLVGVNFDP LPPGAFGSPL CGGNETVRKL KQPTRAPKGK SILKQNAGSS KVSSVFQRTD 240 SSCMQNPIWR MPIDEVGSSV NLDSVHNLGS KLPCFSSGKQ HPQKKEMHPS HSLQDAQFTI 300 YPVNDIVDKF VLTDTLTNDV TSQMERLHKS KETQTTDKVE VLDRLVACEK QCIKRKSEVQ 360 ALIDKEMYDH ERHNGEAVIL ERRSNEVTLQ YVDQPVCYKK ALNKVNMEEE KVRQQEELQL 420 GTTAMEEAVN KTFIAHGNIQ GNMQLIEDEQ LELMKLAASS KGLPSINLLD NDTLDTLHSF 480 QDMLGAFPPE SVLMKRPFAV PPWTDSDENV GNLLMVWKFL VTFAGDFGLW PFTLEEFAQA 540 LHDQDSRLLG EIHVALLKYI IRDLDDVKNA RAYIPCGIED NSDKFGITFL NIVDGAQEWG 600 FDIHFWKSKL NFLTWPEILR QFALSAGFGT KLKKAGYACC HGDKNGVNAG DRVASLDKNV 660 GGSNSALVQQ KDKSSSCDSS YQLTTGTLEF AVFHTLLLIG SEGLTPVEVA DYIKEHRLYD 720 LTTIESAHTS INSILAKDAE LFERVGSITY RVKPCFGKDP SIVEKILNGA TKSIQLYGTS 780 HFAVKLSDRN FEDLGLADRD EDFGDSFDEH PLGGKFTSES SCDLNSTKVS TSLNKSTQYL 840 HPDEPGLINE TGFENVDGVS LLFLESAEDE NFLSMQNDEF FESIHEVSSA SGDVKNSEQF 900 SESWVQELIE GEYSSLSTEE RLKVLVALVG VVVEGNSFHI FIEERLKEAQ ASKKMMLAKM 960 RLDRKLHEEV YGIMDDSTCV HANPKSFNKQ APDLCRYSTL NDVSSQKKEL GQQFSSNSSC 1020 ILPEPLEHAP ASDLSQLELY IDRTAEMLHP FRFLPLGLDR RHNRYWQFST SSSRNDPGSG 1080 RIFFESKDGF WRVIDSDEAF DALLAVLDTH GIRESHLCFM LKRVEIMFKD TTKRRKSREF 1140 YAESTTDTLQ TTLAPDSCTA NHNISSISVL PAYDTIQSSA SLKIDLVSNE ESSASKKYLN 1200 FMKWMWEECF NPRLLCAMRY GTKRCLQLLE TCHICYQPYL ADERHCASCH LTFGIPMNGY 1260 EDFSEHVGRC EADFKLQISI PFIPISIQLL KAQLAIIEAS IPMEAFHPLW DDSYRKSWGI 1320 KLKLSSSARE IFQSLTILEN AIKPDCLCPD FVTTNELLSS ETDFLGNTST EAVRLIPWIP 1380 ETTSAVALRL LDLDCSIPYM LQHGREPLEG TEAGEFLVLP RSTVVEPAHQ VESAISDNTD 1440 DQNGGQGFHT VENCLHQEPG YDGGGQRSCT NMQNIIHGED NSDLEDFSSS GNSDEVEINF 1500 ESSDSLQGVK IPATWSYKTN AESANIYSKA GVMDDEDEES AHKDEFGGGE AVESNECHRW 1560 QETVNSYFEG YLDEQESEGR NSKIVLEQLE DRWDVKNSRW EIAFSTKSAD GEENSSSVNT 1620 K

Sequence ? help Back to Top

Protein Sequence Length: 1621 aa Download sequence

MEFGEGGGGG SPRVAVDGVP KQQAKRKMKT PSQIDVLEKA YTVSSRLSEQ MRQELAQKTE  60
LSSREISMWF ANKRFQGKQA HLPREPKKEE FSPLPLHSSP NGGGSGFVLA ACHFMDSDTN  120
ESSIREVCSK LTRPKPAAPQ LKKKTQLQHM MSQQQPSHEA LDPLVLTFME RKLGGRLRED  180
GPLVGVNFDP LPPGAFGSPL CGGNETVRKL KQPTRAPKGK SILKQNAGSS KVSSVFQRTD  240
SSCMQNPIWR MPIDEVGSSV NLDSVHNLGS KLPCFSSGKQ HPQKKEMHPS HSLQDAQFTI  300
YPVNDIVDKF VLTDTLTNDV TSQMERLHKS KETQTTDKVE VLDRLVACEK QCIKRKSEVQ  360
ALIDKEMYDH ERHNGEAVIL ERRSNEVTLQ YVDQPVCYKK ALNKVNMEEE KVRQQEELQL  420
GTTAMEEAVN KTFIAHGNIQ GNMQLIEDEQ LELMKLAASS KGLPSINLLD NDTLDTLHSF  480
QDMLGAFPPE SVLMKRPFAV PPWTDSDENV GNLLMVWKFL VTFAGDFGLW PFTLEEFAQA  540
LHDQDSRLLG EIHVALLKYI IRDLDDVKNA RAYIPCGIED NSDKFGITFL NIVDGAQEWG  600
FDIHFWKSKL NFLTWPEILR QFALSAGFGT KLKKAGYACC HGDKNGVNAG DRVASLDKNV  660
GGSNSALVQQ KDKSSSCDSS YQLTTGTLEF AVFHTLLLIG SEGLTPVEVA DYIKEHRLYD  720
LTTIESAHTS INSILAKDAE LFERVGSITY RVKPCFGKDP SIVEKILNGA TKSIQLYGTS  780
HFAVKLSDRN FEDLGLADRD EDFGDSFDEH PLGGKFTSES SCDLNSTKVS TSLNKSTQYL  840
HPDEPGLINE TGFENVDGVS LLFLESAEDE NFLSMQNDEF FESIHEVSSA SGDVKNSEQF  900
SESWVQELIE GEYSSLSTEE RLKVLVALVG VVVEGNSFHI FIEERLKEAQ ASKKMMLAKM  960
RLDRKLHEEV YGIMDDSTCV HANPKSFNKQ APDLCRYSTL NDVSSQKKEL GQQFSSNSSC  1020
ILPEPLEHAP ASDLSQLELY IDRTAEMLHP FRFLPLGLDR RHNRYWQFST SSSRNDPGSG  1080
RIFFESKDGF WRVIDSDEAF DALLAVLDTH GIRESHLCFM LKRVEIMFKD TTKRRKSREF  1140
YAESTTDTLQ TTLAPDSCTA NHNISSISVL PAYDTIQSSA SLKIDLVSNE ESSASKKYLN  1200
FMKWMWEECF NPRLLCAMRY GTKRCLQLLE TCHICYQPYL ADERHCASCH LTFGIPMNGY  1260
EDFSEHVGRC EADFKLQISI PFIPISIQLL KAQLAIIEAS IPMEAFHPLW DDSYRKSWGI  1320
KLKLSSSARE IFQSLTILEN AIKPDCLCPD FVTTNELLSS ETDFLGNTST EAVRLIPWIP  1380
ETTSAVALRL LDLDCSIPYM LQHGREPLEG TEAGEFLVLP RSTVVEPAHQ VESAISDNTD  1440
DQNGGQGFHT VENCLHQEPG YDGGGQRSCT NMQNIIHGED NSDLEDFSSS GNSDEVEINF  1500
ESSDSLQGVK IPATWSYKTN AESANIYSKA GVMDDEDEES AHKDEFGGGE AVESNECHRW  1560
QETVNSYFEG YLDEQESEGR NSKIVLEQLE DRWDVKNSRW EIAFSTKSAD GEENSSSVNT  1620
K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	HB-other family protein