PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020678743.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HB-other

Protein Properties

Length: 1600aa MW: 179137 Da PI: 4.8402

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020678743.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	45.8	1e-14	25	79	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++q+++Le+++ ++ +s+++r+eLA+k++L+ r +++WF N+R + k+ XP_020678743.1 25 KRKMKTPSQIDVLEKAYTVSSRLSEQMRQELAQKTELSSREISMWFANKRFQGKQ 79 89999*********************************************98875 PP

Sequence ? help Back to Top
Protein Sequence Length: 1600 aa Download sequence
MEFGEGGGGG SPRVAVDGVP KQQAKRKMKT PSQIDVLEKA YTVSSRLSEQ MRQELAQKTE 60 LSSREISMWF ANKRFQGKQA HLPREPKKEE FSPLPLHSSP NGGGSGFVLA ACHFMDSDTN 120 ESSIREVCSK LTRPKPAAPQ LKKKTQLQHM MSQQQPSHEA LDPLVLTFME RKLGGRLRED 180 GPLVGVNFDP LPPGAFGSPL CGGNETVRKL KQPTRAPKGK SILKQNAGSS KVSSVFQRTD 240 SSCMQNPIWR MPIDEVGSSV NLDSVHNLGS KLPCFSSGKQ HPQKKEMHPS HSLQADAQFT 300 IYPVNDIVDK FVLTDTLTND VTSQMERLHK SKETQTTDKV EVLDRLVACE KQCIKRKSEV 360 QALIDKEMYD HERHNGEAVI LERRSNEEEK VRQQEELQLG TTAMEEAVNK TFIAHGNIQG 420 NMQLIEDEQL ELMKLAASSK GLPSINLLDN DTLDTLHSFQ DMLGAFPPES VLMKRPFAVP 480 PWTDSDENVG NLLMVWKFLV TFAGDFGLWP FTLEEFAQAL HDQDSRLLGE IHVALLKYII 540 RDLDDVKNAR AYIPCGIEDN SDKFGITFLN IVDGAQEWGF DIHFWKSKLN FLTWPEILRQ 600 FALSAGFGTK LKKAGYACCH GDKNGVNAGD RVASLDKNVG GSNSALVQQK DKSSSCDSSY 660 QLTTGTLEFA VFHTLLLIGS EGLTPVEVAD YIKEHRLYDL TTIESAHTSI NSILAKDAEL 720 FERVGSITYR VKPCFGKDPS IVEKILNGAT KSIQLYGTSH FAVKLSDRNF EDLGLADRDE 780 DFGDSFDEHP LGGKFTSESS CDLNSTKVST SLNKSTQYLH PDEPGLINET GFENVDGVSL 840 LFLESAEDEN FLSMQNDEFF ESIHEVSSAS GDVKNSEQFS ESWVQELIEG EYSSLSTEER 900 LKVLVALVGV VVEGNSFHIF IEERLKEAQA SKKMMLAKMR LDRKLHEEVY GIMDDSTCVH 960 ANPKSFNKQA PDLCRYSTLN DVSSQKKELG QQFSSNSSCI LPEPLEHAPA SDLSQLELYI 1020 DRTAEMLHPF RFLPLGLDRR HNRYWQFSTS SSRNDPGSGR IFFESKDGFW RVIDSDEAFD 1080 ALLAVLDTHG IRESHLCFML KRVEIMFKDT TKRRKSREFY AESTTDTLQT TLAPDSCTAN 1140 HNISSISVLP AYDTIQSSAS LKIDLVSNEE SSASKKYLNF MKWMWEECFN PRLLCAMRYG 1200 TKRCLQLLET CHICYQPYLA DERHCASCHL TFGIPMNGYE DFSEHVGRCE ADFKLQISIP 1260 FIPISIQLLK AQLAIIEASI PMEAFHPLWD DSYRKSWGIK LKLSSSAREI FQSLTILENA 1320 IKPDCLCPDF VTTNELLSSE TDFLGNTSTE AVRLIPWIPE TTSAVALRLL DLDCSIPYML 1380 QHGREPLEGT EAGEFLVLPR STVVEPAHQV ESAISDNTDD QNGGQGFHTV ENCLHQEPGY 1440 DGGGQRSCTN MQNIIHGEDN SDLEDFSSSG NSDEVEINFE SSDSLQGVKI PATWSYKTNA 1500 ESANIYSKAG VMDDEDEESA HKDEFGGGEA VESNECHRWQ ETVNSYFEGY LDEQESEGRN 1560 SKIVLEQLED RWDVKNSRWE IAFSTKSADG EENSSSVNTK

Sequence ? help Back to Top

Protein Sequence Length: 1600 aa Download sequence

MEFGEGGGGG SPRVAVDGVP KQQAKRKMKT PSQIDVLEKA YTVSSRLSEQ MRQELAQKTE  60
LSSREISMWF ANKRFQGKQA HLPREPKKEE FSPLPLHSSP NGGGSGFVLA ACHFMDSDTN  120
ESSIREVCSK LTRPKPAAPQ LKKKTQLQHM MSQQQPSHEA LDPLVLTFME RKLGGRLRED  180
GPLVGVNFDP LPPGAFGSPL CGGNETVRKL KQPTRAPKGK SILKQNAGSS KVSSVFQRTD  240
SSCMQNPIWR MPIDEVGSSV NLDSVHNLGS KLPCFSSGKQ HPQKKEMHPS HSLQADAQFT  300
IYPVNDIVDK FVLTDTLTND VTSQMERLHK SKETQTTDKV EVLDRLVACE KQCIKRKSEV  360
QALIDKEMYD HERHNGEAVI LERRSNEEEK VRQQEELQLG TTAMEEAVNK TFIAHGNIQG  420
NMQLIEDEQL ELMKLAASSK GLPSINLLDN DTLDTLHSFQ DMLGAFPPES VLMKRPFAVP  480
PWTDSDENVG NLLMVWKFLV TFAGDFGLWP FTLEEFAQAL HDQDSRLLGE IHVALLKYII  540
RDLDDVKNAR AYIPCGIEDN SDKFGITFLN IVDGAQEWGF DIHFWKSKLN FLTWPEILRQ  600
FALSAGFGTK LKKAGYACCH GDKNGVNAGD RVASLDKNVG GSNSALVQQK DKSSSCDSSY  660
QLTTGTLEFA VFHTLLLIGS EGLTPVEVAD YIKEHRLYDL TTIESAHTSI NSILAKDAEL  720
FERVGSITYR VKPCFGKDPS IVEKILNGAT KSIQLYGTSH FAVKLSDRNF EDLGLADRDE  780
DFGDSFDEHP LGGKFTSESS CDLNSTKVST SLNKSTQYLH PDEPGLINET GFENVDGVSL  840
LFLESAEDEN FLSMQNDEFF ESIHEVSSAS GDVKNSEQFS ESWVQELIEG EYSSLSTEER  900
LKVLVALVGV VVEGNSFHIF IEERLKEAQA SKKMMLAKMR LDRKLHEEVY GIMDDSTCVH  960
ANPKSFNKQA PDLCRYSTLN DVSSQKKELG QQFSSNSSCI LPEPLEHAPA SDLSQLELYI  1020
DRTAEMLHPF RFLPLGLDRR HNRYWQFSTS SSRNDPGSGR IFFESKDGFW RVIDSDEAFD  1080
ALLAVLDTHG IRESHLCFML KRVEIMFKDT TKRRKSREFY AESTTDTLQT TLAPDSCTAN  1140
HNISSISVLP AYDTIQSSAS LKIDLVSNEE SSASKKYLNF MKWMWEECFN PRLLCAMRYG  1200
TKRCLQLLET CHICYQPYLA DERHCASCHL TFGIPMNGYE DFSEHVGRCE ADFKLQISIP  1260
FIPISIQLLK AQLAIIEASI PMEAFHPLWD DSYRKSWGIK LKLSSSAREI FQSLTILENA  1320
IKPDCLCPDF VTTNELLSSE TDFLGNTSTE AVRLIPWIPE TTSAVALRLL DLDCSIPYML  1380
QHGREPLEGT EAGEFLVLPR STVVEPAHQV ESAISDNTDD QNGGQGFHTV ENCLHQEPGY  1440
DGGGQRSCTN MQNIIHGEDN SDLEDFSSSG NSDEVEINFE SSDSLQGVKI PATWSYKTNA  1500
ESANIYSKAG VMDDEDEESA HKDEFGGGEA VESNECHRWQ ETVNSYFEGY LDEQESEGRN  1560
SKIVLEQLED RWDVKNSRWE IAFSTKSADG EENSSSVNTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	HB-other family protein