PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020678757.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 795aa MW: 91330.8 Da PI: 6.6795

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020678757.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.1	2e-20	70	156	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++Y++++GF+vrk k+++ + +++i k+ ++Cskeg + ++ ++ k++ +r+ rtgCka ++ + +++g+w+vtk+ eHnH+l+ XP_020678757.1 70 LYRDYGRNMGFNVRKGKQYYYTGSRNIRKKYYYCSKEGAKIDKLSS--KSKFHRKDVRTGCKAFVQFTVDEKGQWKVTKMGVEHNHDLV 156 7************************************9999888..9999*********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 795 aa Download sequence
MENAAEKTVQ DSDRDDASHP SDGEVGAFSS NTSGEVDSCN LELSEVLSPE QAKKELMGQV 60 VQNEKEAYRL YRDYGRNMGF NVRKGKQYYY TGSRNIRKKY YYCSKEGAKI DKLSSKSKFH 120 RKDVRTGCKA FVQFTVDEKG QWKVTKMGVE HNHDLVKPKE RHVLKPISSS KSAEASLPYS 180 TMDVEIHTLN ADSGGDTENG DSFVNLQQMA QINVEETRSL ISYFKRKAGE EGMFYWDVQV 240 DHEGRMTNIF WRDGRSRIDY DCFCDVVSFD STSHIKKYGF TCVPLIGVNH HWQNVMFGCA 300 FLLDETEASF VWLLKTFLES MGNRPPRTIL TNDDVALERA IELVLPSTRH RLCLWHILKK 360 ASSCFGSLNS SKRLLDSFDK CLQGCDSEME FEETWRKMVL DYGVEDHEWL NNLYKNRQKW 420 CSVLSKDCFD GGIESPRRSE SFENVLNSIV DRSISLGEFT HEFEKLLEDW RQNEEKEDLA 480 CRQDGPRRAI EHSDILNHAA KLYTHKMYKI FEEEFLDGCC AASFREIHCG GDLYKFELTM 540 QGRDSKVWIV HLDISKMELC CTCNKFNTMG ILCSHALKAL SLKNVNRIPE NYIIKRWTKD 600 ARKGVYRLEG SWQLLGEDLE DEFKYHNLAI RYAYDLVMRS QGHKQARKII WDSFLRGERQ 660 LDSFFEKKCL DENSGNRDNS DESECEEAGE KSLRTSSLRK SNSRKTKKKR SVDLYRGDEF 720 GEPNCSAFPP LCNSTSGTQL GFFPSLSPGC FSPPMYTPLS QMPTQISNIN WVLGSPPSYA 780 SNAQGNQNAA QNLHL

Sequence ? help Back to Top

Protein Sequence Length: 795 aa Download sequence

MENAAEKTVQ DSDRDDASHP SDGEVGAFSS NTSGEVDSCN LELSEVLSPE QAKKELMGQV  60
VQNEKEAYRL YRDYGRNMGF NVRKGKQYYY TGSRNIRKKY YYCSKEGAKI DKLSSKSKFH  120
RKDVRTGCKA FVQFTVDEKG QWKVTKMGVE HNHDLVKPKE RHVLKPISSS KSAEASLPYS  180
TMDVEIHTLN ADSGGDTENG DSFVNLQQMA QINVEETRSL ISYFKRKAGE EGMFYWDVQV  240
DHEGRMTNIF WRDGRSRIDY DCFCDVVSFD STSHIKKYGF TCVPLIGVNH HWQNVMFGCA  300
FLLDETEASF VWLLKTFLES MGNRPPRTIL TNDDVALERA IELVLPSTRH RLCLWHILKK  360
ASSCFGSLNS SKRLLDSFDK CLQGCDSEME FEETWRKMVL DYGVEDHEWL NNLYKNRQKW  420
CSVLSKDCFD GGIESPRRSE SFENVLNSIV DRSISLGEFT HEFEKLLEDW RQNEEKEDLA  480
CRQDGPRRAI EHSDILNHAA KLYTHKMYKI FEEEFLDGCC AASFREIHCG GDLYKFELTM  540
QGRDSKVWIV HLDISKMELC CTCNKFNTMG ILCSHALKAL SLKNVNRIPE NYIIKRWTKD  600
ARKGVYRLEG SWQLLGEDLE DEFKYHNLAI RYAYDLVMRS QGHKQARKII WDSFLRGERQ  660
LDSFFEKKCL DENSGNRDNS DESECEEAGE KSLRTSSLRK SNSRKTKKKR SVDLYRGDEF  720
GEPNCSAFPP LCNSTSGTQL GFFPSLSPGC FSPPMYTPLS QMPTQISNIN WVLGSPPSYA  780
SNAQGNQNAA QNLHL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-88	FAR1 family protein