PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020678769.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 232aa MW: 26149.3 Da PI: 4.7388

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020678769.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56	9.2e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+lv +++ +G ++W++ +++ g+ R++k+c++rw +yl XP_020678769.1 14 KGQWTPEEDEILVSYIQNYGHENWRALPKEAGLLRCGKSCRLRWINYL 61 799***************************99**********97 PP
2	Myb_DNA-binding	52.6	1.1e-16	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++ ++ ++++lG++ W++Ia +++ gRt++++k+ w+++l XP_020678769.1 67 RGNFTKEEEDAIISLHQMLGNR-WSAIAMMLP-GRTDNEIKNVWNTHL 112 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence
MVRAPCCEKV GLNKGQWTPE EDEILVSYIQ NYGHENWRAL PKEAGLLRCG KSCRLRWINY 60 LRPGIKRGNF TKEEEDAIIS LHQMLGNRWS AIAMMLPGRT DNEIKNVWNT HLKKRLNPNQ 120 ILPKSKRKMQ RQDNLNSIME FSSASVSESC SDFSSSCTES SNVTEGDSNN ASGNDGSLES 180 RHDLGVEEID ESLSMNGCDD SPLMVAGSPI EEDMSFWLRI FEAGELEGFP EI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	9e-73	MYB family protein