PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020678791.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 242aa MW: 27777.1 Da PI: 5.419

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020678791.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.7	1.2e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++ +G g+W++ ++ g+ R++k+c++rw +yl XP_020678791.1 14 KGPWTAEEDQILISYIQSHGHGNWRALPKLSGLLRCGKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	46.6	7.9e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE++ ++ +++++G g W++Ia++++ gRt++++k+ w+++l XP_020678791.1 67 RGNFTREEEDVIITLHQMHGYG-WAAIAARLP-GRTDNEIKNVWHTHL 112 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MVRAPCCEKM GLKKGPWTAE EDQILISYIQ SHGHGNWRAL PKLSGLLRCG KSCRLRWTNY 60 LNPDIKRGNF TREEEDVIIT LHQMHGYGWA AIAARLPGRT DNEIKNVWHT HLKKRLKTGT 120 ETTQESTREN QIESKEEKPT QSFSSTDVSC SGTTESSTEN SQNSMESSLI HDIQEIDESF 180 WTETLQMDSN AKKNSMDSME LMEGFSSKFR DETFLLSAGS RDEDDMSYWL RIFLQAEELP 240 KI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	118	LKKRLKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	4e-72	MYB family protein