PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020678874.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB_related
Protein Properties Length: 354aa    MW: 39456.4 Da    PI: 8.4721
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020678874.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.31.8e-1382126147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
   XP_020678874.1  82 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 126
                      789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    
MLYAIPAAEG GGSEFRGQAG FSADSFHRHH HQQQQQQQKG IPTGMVFQEV LGSITTSAAA  60
EETSSEDPNK KIRKPYTITK SRESWTEQEH DKFLEALQLF DRDWKKIEAF VGSKTVIQIR  120
SHAQKYFLKV QKNGTSEHVP PPRPKRKAAH PYPQKASKNG HQVPQPTTSF QTSPCLPEPV  180
YTLTSDRSSV IRNSTSGAIS SWVPIQPVEA LHTIKEDAGP TGSMLLNNSS SSSSTENPQR  240
IRQICETTDQ GHHVPSVRAM PDFARVYSFI GNIFDPSKRG HLQKLMEMDP IDVETVLLLM  300
RNLSINLTNP DFEDHRRLLS LYDACAEEGK SSGTKGMLKA AEPINVPFLV KAEQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.13e-85MYB_related family protein