PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020678877.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

G2-like

Protein Properties

Length: 351aa MW: 38779 Da PI: 5.0758

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020678877.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.1	1.5e-31	221	276	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv a++qLGG+++AtPk+i+elm v+gLt+++vkSHLQkYRl+ XP_020678877.1 221 KARRCWSPELHRRFVMALQQLGGAQVATPKQIRELMMVDGLTNDEVKSHLQKYRLH 276 68****************************************************97 PP
2	Myb_DNA-binding	39.8	1e-12	223	274	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r W++e++ ++v a +qlGg t+k I + m g+t ++ks++qky+ XP_020678877.1 223 RRCWSPELHRRFVMALQQLGGAqvaTPKQIRELMMvDGLTNDEVKSHLQKYR 274 568***************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MGSLMAELGL DLKLFTKKTI GCFLKNEMKL KDFVGLLEEE RQKIEAFKRE LPLCMILVND 60 VIDELKLEAE QCQGGDGVIE EEFIPLKARS DEEDKEDQKD VKLEKDNMEK MDWMSSVQLW 120 NDNCSDESVN FKKDSHKQNG DAVSLESKSR SAGIGAFLPL KVILTRNEEK TLSISLPDLP 180 TAISAPTATT SAVASDNRII GQSAPSTSAG SAYLVLQAQR KARRCWSPEL HRRFVMALQQ 240 LGGAQVATPK QIRELMMVDG LTNDEVKSHL QKYRLHTRRM PSSTATEANK AVAMVGSLWA 300 SQDQSQISQQ SVTQFGSPQG PLQLACTAQA LSATGGDSCE DDGRSESYSW K

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MGSLMAELGL DLKLFTKKTI GCFLKNEMKL KDFVGLLEEE RQKIEAFKRE LPLCMILVND  60
VIDELKLEAE QCQGGDGVIE EEFIPLKARS DEEDKEDQKD VKLEKDNMEK MDWMSSVQLW  120
NDNCSDESVN FKKDSHKQNG DAVSLESKSR SAGIGAFLPL KVILTRNEEK TLSISLPDLP  180
TAISAPTATT SAVASDNRII GQSAPSTSAG SAYLVLQAQR KARRCWSPEL HRRFVMALQQ  240
LGGAQVATPK QIRELMMVDG LTNDEVKSHL QKYRLHTRRM PSSTATEANK AVAMVGSLWA  300
SQDQSQISQQ SVTQFGSPQG PLQLACTAQA LSATGGDSCE DDGRSESYSW K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	9e-53	G2-like family protein