PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020678962.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family HD-ZIP
Protein Properties Length: 273aa    MW: 31010.4 Da    PI: 4.5242
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020678962.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-1848101356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ eq+++Le+ Fe +++++ e++ ++A  lgL+ rqV vWFqNrRa++k
  XP_020678962.1  48 KKRRLSLEQVRALEKNFEVENKLDPERKVRIALDLGLQPRQVAVWFQNRRARWK 101
                     4558999**********************************************9 PP
2HD-ZIP_I/II126.89.7e-4147139193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrrls eqv++LE++Fe e+kL+perKv++a +LglqprqvavWFqnrRAR+ktkqlE+dy+aL+++ydal+ + ++L++++e L +e+ke
  XP_020678962.1  47 EKKRRLSLEQVRALEKNFEVENKLDPERKVRIALDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRTSYDALAIDCDSLRRDKEILLAEVKE 139
                     69*************************************************************************************999986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    
MKRPRSSDSV TGGDLYAVKL PTILDGVEED EEEEGLFSGE LPLAAGEKKR RLSLEQVRAL  60
EKNFEVENKL DPERKVRIAL DLGLQPRQVA VWFQNRRARW KTKQLERDYA ALRTSYDALA  120
IDCDSLRRDK EILLAEVKEF KTKLGLTEEE SESKAAPVED PQPQTAMGAA VTYKDGSSDS  180
DSSAVVYDEN SPYHCGAPLL PELHRRPTEP EEPQSLMVGG GAFDFQLSSE WRIQRSFFPK  240
EEHNFLAGEE HSSDFFPEEQ NPVFTWYGSD HWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196104RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.14e-50HD-ZIP family protein