PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020679060.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

AP2

Protein Properties

Length: 478aa MW: 53136.4 Da PI: 7.0149

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020679060.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.8	2.3e-17	142	191	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a++k++g XP_020679060.1 142 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAALKFRG 191 78*****************......55**********************997 PP
2	AP2	43.8	6.4e-14	234	284	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV+ +k grW+A+ g +k+++lg f+t+ eAa+a+++a+ +l+g XP_020679060.1 234 SKFRGVTLHK-CGRWEAR---L---GqllGKKYVYLGLFDTEVEAARAYDKAAIRLNG 284 79******.7**...5...334336******99**********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 478 aa Download sequence
MWDLNESPDQ RNAAISQVEE ISSGGSEAMV MELGAGSTEN SSSSTVVIEH SNGGVGVEDL 60 FGFEESYSGE SETVVTHQFF PISERKPELP LLTLGAGGMP PEQNTRFGLK LSEPAMAGGV 120 VKNMVVSQPI KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR 180 AYDRAALKFR GVEADINFIL SDYEDELKQM GNLTKEEFVL LLRRQSTGFP RGSSKFRGVT 240 LHKCGRWEAR LGQLLGKKYV YLGLFDTEVE AARAYDKAAI RLNGRDAVTN FDPRKYGEEL 300 NSEDVEADHN LDLTLGSFSS KRSLAPIEDD GLMIMDQRVQ MSYEPEWIRS TGPKYDDKPN 360 LPEQEHYRTN HHPSSSIYIQ TPVLQAHRLE FANHKQFRSS SHGMKTKDEG LGLFSLSVSS 420 NEQPRRLPVS AMGGGIQWPA SAAFTASSSP HLFSAMTAAS SGFSYQTVRP QPNKIQRN

Sequence ? help Back to Top

Protein Sequence Length: 478 aa Download sequence

MWDLNESPDQ RNAAISQVEE ISSGGSEAMV MELGAGSTEN SSSSTVVIEH SNGGVGVEDL  60
FGFEESYSGE SETVVTHQFF PISERKPELP LLTLGAGGMP PEQNTRFGLK LSEPAMAGGV  120
VKNMVVSQPI KKSRRGPRSR SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR  180
AYDRAALKFR GVEADINFIL SDYEDELKQM GNLTKEEFVL LLRRQSTGFP RGSSKFRGVT  240
LHKCGRWEAR LGQLLGKKYV YLGLFDTEVE AARAYDKAAI RLNGRDAVTN FDPRKYGEEL  300
NSEDVEADHN LDLTLGSFSS KRSLAPIEDD GLMIMDQRVQ MSYEPEWIRS TGPKYDDKPN  360
LPEQEHYRTN HHPSSSIYIQ TPVLQAHRLE FANHKQFRSS SHGMKTKDEG LGLFSLSVSS  420
NEQPRRLPVS AMGGGIQWPA SAAFTASSSP HLFSAMTAAS SGFSYQTVRP QPNKIQRN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	1e-104	AP2 family protein