PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020679115.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

ARR-B

Protein Properties

Length: 550aa MW: 63512.8 Da PI: 5.2983

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020679115.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	79.3	4.7e-25	202	255	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++W+ eLH++Fv+av+q+ G +k Pk+il+lm+v+gLt+e+++SHLQkYR+ XP_020679115.1 202 KARVVWSVELHQKFVNAVDQI-GFDKVGPKKILDLMNVPGLTRENIASHLQKYRM 255 68*****************.9*****************************8 PP
2	Myb_DNA-binding	40.5	6.1e-13	204	254	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 r W+ e+++++v+av q G + +k+I m+ g+t++++ s++qky+ XP_020679115.1 204 RVVWSVELHQKFVNAVDQIGFDkvGPKKILDLMNvPGLTRENIASHLQKYR 254 678***********************************************7 PP
3	Response_reg	80	7.7e-27	21	129	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+vdD+ + +++l+++l+k y +v+++ ++++al+ll+e++ +D+++ D++mp+mdG++ll++ e +lp+i+++ ge + + + ++ G XP_020679115.1 21 VLVVDDDLTWLKILEKMLRKCSY-DVTTCCKARAALDLLRERKdrFDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQHG 113 89*******************.***********888778******************6644.8****************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ ++el++ XP_020679115.1 114 ACDYLLKPIRMKELRN 129 ***********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence
MQMESSSASS RVESFPIGLR VLVVDDDLTW LKILEKMLRK CSYDVTTCCK ARAALDLLRE 60 RKDRFDIVIS DVNMPDMDGF KLLEHVGLEM DLPVIMMSVD GETSRVMKGV QHGACDYLLK 120 PIRMKELRNI WQHVYRKRVH EVKDMEFHDI NDDIHILRSG FENFDDRLFM STSEMISLRK 180 RKDVDTRDFS DQDLYDSATV KKARVVWSVE LHQKFVNAVD QIGFDKVGPK KILDLMNVPG 240 LTRENIASHL QKYRMYLCRL QKQNEARDFT GNKQPDHSPE DHSVSLGIQN PRSSHHNGGG 300 HKSQNIQGLE MIDDFQESEL NKPDFLPVKD KKEDLHSQKA NNSPLPGPPL QKGWHESVLL 360 RQFMQYPKHD HEPFSLLEDH SHPTQTEEPL VSIISNEKEG TEFDIKPSVV NRKDCHMKII 420 STYEDDSVST QVEHVNSKVF GAAYEHNKLV GSKEQQYEQS RVHDLIPPSI YLNTKNEIDL 480 IALPEDLNLP YLQGIGCVEN VGFNGMELHQ YNSCASLTEL QNNSYDEIEL NCEYWYDPLE 540 YPFLDECLFA

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence

MQMESSSASS RVESFPIGLR VLVVDDDLTW LKILEKMLRK CSYDVTTCCK ARAALDLLRE  60
RKDRFDIVIS DVNMPDMDGF KLLEHVGLEM DLPVIMMSVD GETSRVMKGV QHGACDYLLK  120
PIRMKELRNI WQHVYRKRVH EVKDMEFHDI NDDIHILRSG FENFDDRLFM STSEMISLRK  180
RKDVDTRDFS DQDLYDSATV KKARVVWSVE LHQKFVNAVD QIGFDKVGPK KILDLMNVPG  240
LTRENIASHL QKYRMYLCRL QKQNEARDFT GNKQPDHSPE DHSVSLGIQN PRSSHHNGGG  300
HKSQNIQGLE MIDDFQESEL NKPDFLPVKD KKEDLHSQKA NNSPLPGPPL QKGWHESVLL  360
RQFMQYPKHD HEPFSLLEDH SHPTQTEEPL VSIISNEKEG TEFDIKPSVV NRKDCHMKII  420
STYEDDSVST QVEHVNSKVF GAAYEHNKLV GSKEQQYEQS RVHDLIPPSI YLNTKNEIDL  480
IALPEDLNLP YLQGIGCVEN VGFNGMELHQ YNSCASLTEL QNNSYDEIEL NCEYWYDPLE  540
YPFLDECLFA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67710.1	1e-118	ARR-B family protein