PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020679203.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family ARF
Protein Properties Length: 807aa    MW: 90638.2 Da    PI: 6.4398
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020679203.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.71.8e-22128229199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d +   W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_020679203.1 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDIHDVDWKFRHIFRGQPKRHLLTTGWSIFVSAKRLVAGDSVLFI--WNE 218
                     99*****************************8544444..48************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_020679203.1 219 KNQLLLGIRRA 229
                     9999****997 PP
2Auxin_resp117.31.3e-38254337183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++Y+Pra++seFv++++k++ka+  ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  XP_020679203.1 254 AAHAAATNSRFTIFYHPRACPSEFVIPLSKYVKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 337
                     79********************************87599******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 807 aa     Download sequence    
MKLSTVGVLV QQDEEGGDKR CLNSELWHAC AGPLVCLPNV GTRVVYFPQG HSEQVVASTN  60
KEVEGHIPNY PNLPPQLICQ LHDVTMHADA ETDEVYTQMT LQPLNPDLKD TYLPAEMGLP  120
SKQPMNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDFS QQPPAQELIA RDIHDVDWKF  180
RHIFRGQPKR HLLTTGWSIF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAN RPQNAVPSSV  240
ISSDSMHIGL LAAAAHAAAT NSRFTIFYHP RACPSEFVIP LSKYVKAVFH TRVSVGMRFR  300
MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVNW DESTAGDRQP RASLWEIEPL  360
TTFPMYPSLF PLRLKPPWYT GVSSLNDYKL DEGNAYMWLR GSSGGGIRSL NFQSPGIGPC  420
VQQQVQPQLG NNHTPYQAMD AAACDIRGMD SLRQPFLNFQ QPFQFPQQFC MNPLLQQQVI  480
QQAHHEQIMN SQAQSLLDSQ PNITSNQLLQ QPYGDQQKQK GQQQPTYPEL FHVQINNIEQ  540
QQLPIPSPLS QKSVFPDSTM NFSSVATPSC IQNLSAAAYS GTNANNLHFA KTGQTMLAEQ  600
HQQKWDPQFA LQKVSTFGNT VLLQPFHGKD DTRESDVSPT DTQNHSLFDI NVGSSLLLGN  660
VVPNLLNANN NDNVVSSMPF TTSYLQNSLY HSLDESSGML QHTYDIDPSI KTFVKVYKSG  720
SVGRSLDITR FSNYTELRKA LGQMFGIEGQ LENPLRSGWQ LVFVDRENDV LLLGDDPWES  780
FVNNVWYIKI LSPEDVQQMG QQGVDLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0ARF family protein