PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020679260.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 369aa MW: 43450.7 Da PI: 9.7147

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020679260.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00017	22	45	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C++Cg + s ks+L++Hi + H XP_020679260.1 22 YYCEHCGICRSKKSLLRSHILSnH 45 89******************9988 PP
2	zf-C2H2	15.1	6.4e-05	69	91	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ Cg +F + +L +H+r+H XP_020679260.1 69 HACEECGARFWKPAHLAQHMRSH 91 67********************9 PP
3	zf-C2H2	18.4	5.9e-06	97	121	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp dC s++rk++L+rH+ +H XP_020679260.1 97 FACPvkDCYFSYRRKDHLNRHLLKH 121 78*********************99 PP
4	zf-C2H2	13.4	0.00023	126	151	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + Cp C++sFs + n+krH ++ H XP_020679260.1 126 FDCPvqCCNRSFSFQGNMKRHGKKlH 151 679999***************99988 PP
5	zf-C2H2	15.7	4.2e-05	163	187	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ Cgk+F s Lk+H +H XP_020679260.1 163 HTCEkpGCGKTFEFASKLKKHKDSH 187 789999***************9988 PP
6	zf-C2H2	17.3	1.4e-05	254	278	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ C ++Fs ksnL++H + H XP_020679260.1 254 KCSfqGCEQTFSKKSNLNKHVKAvH 278 799999**************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence
METEAGKGND EQRLIFRDIR RYYCEHCGIC RSKKSLLRSH ILSNHKEELQ KEKLHEVSAF 60 KPASRKVQHA CEECGARFWK PAHLAQHMRS HSVERPFACP VKDCYFSYRR KDHLNRHLLK 120 HQGTVFDCPV QCCNRSFSFQ GNMKRHGKKL HGDDTPDEGK KRHTCEKPGC GKTFEFASKL 180 KKHKDSHLEV EFLEIFCGEP HCMKPFTNSE CLKAHIQSCH KYVKCEVCGA QQLRKNFKRH 240 QRTHEGVISK ERIKCSFQGC EQTFSKKSNL NKHVKAVHEK LRPFRCSTSG CQQRFSYKHV 300 RDNHEMTHVY MQGDFFEVDE QWRSRPRGGR KRERITIEAL TRKRVVPLDR TSIMENGAGY 360 LRWLFADDE

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence

METEAGKGND EQRLIFRDIR RYYCEHCGIC RSKKSLLRSH ILSNHKEELQ KEKLHEVSAF  60
KPASRKVQHA CEECGARFWK PAHLAQHMRS HSVERPFACP VKDCYFSYRR KDHLNRHLLK  120
HQGTVFDCPV QCCNRSFSFQ GNMKRHGKKL HGDDTPDEGK KRHTCEKPGC GKTFEFASKL  180
KKHKDSHLEV EFLEIFCGEP HCMKPFTNSE CLKAHIQSCH KYVKCEVCGA QQLRKNFKRH  240
QRTHEGVISK ERIKCSFQGC EQTFSKKSNL NKHVKAVHEK LRPFRCSTSG CQQRFSYKHV  300
RDNHEMTHVY MQGDFFEVDE QWRSRPRGGR KRERITIEAL TRKRVVPLDR TSIMENGAGY  360
LRWLFADDE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-108	C2H2 family protein