PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020679397.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28184.2 Da    PI: 8.1993
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020679397.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.93.5e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k ienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++g+l+e++s
  XP_020679397.1  9 KMIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGRLFEFCS 59
                    68***********************************************96 PP
2K-box101.21.4e-33781735100
           K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     s +   ++++++ +qe+ kLk+++e Lqr+qR+llGedL++L+ keL+qLe+qLe slk+iRs+K++++l+q+ +l++ke++lqe+n+aLr+kl 
  XP_020679397.1  78 SETVIPSKETQNNYQEYLKLKARVEYLQRSQRNLLGEDLGQLTTKELEQLEHQLEISLKQIRSTKSQFMLDQLCDLKRKEQMLQEANRALRMKLH 172
                     444478899************************************************************************************97 PP

           K-box 100 e 100
                     e
  XP_020679397.1 173 E 173
                     5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MGRGRVELKM IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGRLFEFCSS  60
SSMMKTLERY QKCSYNSSET VIPSKETQNN YQEYLKLKAR VEYLQRSQRN LLGEDLGQLT  120
TKELEQLEHQ LEISLKQIRS TKSQFMLDQL CDLKRKEQML QEANRALRMK LHEDEPEIPL  180
QLSWPGGCSG GNGGGHCDRQ PQSDVFFQPL PCDPSLQIGY SPVCIEQQLN TGSSSHNVNG  240
FLPGWM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.11e-102MIKC_MADS family protein