PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020679487.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 175aa MW: 18730.5 Da PI: 9.6565

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020679487.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.1e-05	56	78	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk+F++ L H ++H XP_020679487.1 56 HRCKVCGKVFPSYQALGGHKSSH 78 79************999999988 PP

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence
MAVIETLLSL SPFTSSTTEQ LIPLGFLILA GSGGGLTASH RGPNPILPGR PKPGIHRCKV 60 CGKVFPSYQA LGGHKSSHRR YAGPGDLGVV APSLTWPGGL GSGKHQCSVC LRRFASGQAL 120 GGHKRLHYWD CPFVVSKESE FNVGNRDFDL NLPPPTVESE ELQSHLPAKK LRLSE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49930.1	8e-23	C2H2 family protein