PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020679601.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MIKC_MADS
Protein Properties Length: 210aa    MW: 24479.3 Da    PI: 9.8489
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020679601.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.93.7e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++nrqvtfskRrngi+KKA+E+SvLCda+v+++ifss gk++ey+s
  XP_020679601.1  9 KRIENSTNRQVTFSKRRNGIMKKAKEISVLCDAQVSLVIFSSLGKMFEYCS 59
                    79***********************************************96 PP
2K-box81.91.5e-2771167197
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     yq++sgk+l++ak+e+l+ e++++kke++n+q e+Rhl+GedL+sL+ keL  +e++L+++l+ +R+k++++l++  ++ ++ e+e+++ +  L+
  XP_020679601.1  71 YQQNSGKKLWDAKHENLSAEIDRIKKENDNMQIELRHLKGEDLNSLNPKELIPIEEALQNGLTGVRDKQMDFLKMLKKNERMLEEENKRLTYLLH 165
                     899**********************************************************************9988888888888888777777 PP

           K-box  96 kk 97 
                     ++
  XP_020679601.1 166 HQ 167
                     65 PP
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    
MGRGKIEIKR IENSTNRQVT FSKRRNGIMK KAKEISVLCD AQVSLVIFSS LGKMFEYCSP  60
STTLSKMLEK YQQNSGKKLW DAKHENLSAE IDRIKKENDN MQIELRHLKG EDLNSLNPKE  120
LIPIEEALQN GLTGVRDKQM DFLKMLKKNE RMLEEENKRL TYLLHHQQLA MEGSMRELDI  180
GYHQKDREYA AQMPLTFRVQ PIQPNLQGNK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.15e-87MIKC_MADS family protein