PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020679947.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NF-X1

Protein Properties

Length: 709aa MW: 78642.1 Da PI: 8.189

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020679947.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	22.9	1.9e-07	217	235	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 CG+H+C++ CH G C++C XP_020679947.1 217 CGRHTCERVCHNGACGSCL 235 ******************6 PP

Sequence ? help Back to Top
Protein Sequence Length: 709 aa Download sequence
MSSYSSVNRR NYTAGHRDRR AAAPKQEWVP RGSIALSPPA NTGSVPSIVQ DIQDKLARGA 60 VECMSCYDMV RRSTPIWSCS TCFSIFHLNC IRKWARSPAC IAADDWHCPG CQTPQSTPAR 120 HLSYTCFCGR RRDPPNDQHL CPHSCGKPCG KPLDGGGKKL RCPHFCVLQC HPGPCPPCKA 180 FAPRRKCPCG KTNVVRRCSD RRAPLSCEKP CNRFLGCGRH TCERVCHNGA CGSCLELLTT 240 KCFCGKKEQE VICSDVAMKG NFDEKSRLFS CDDVCGRSLL CGNHFCRENC HPGLCGECEL 300 LPGKISTCHC GKKKIVDERM TCMDLIPTCS NVCGKPLVCK THFCRMRCHE GDCLPCSALV 360 QQRCRCGSSR RTVECYQLFD TMFKFLCERT CYRKKNCGRH RCKDRCCVLS KTGDFDPHLC 420 LLPCGKMLQC GKLTCQLPCH GGRCSPCLET ISTDITCASG MTTISTNLDA LHVGENLATS 480 DVFSDIMWRQ PKEGSGNSMK VYVFCNILME KRAALLQIAE WWKLLVQIAG WEPKSLPTVH 540 AICKSKPGFL MVAAYPPAHD PLIDMDPRCV VALPCLPMDA DISSLVLRFD RVNELVCLND 600 KNSMAVLSDP ARVATALQRL SHRFTFQGAA PAASRSNEYG NSSKWTVALE MDLTEASILV 660 WRGNHGNPVL ENANRWNLLD DVVLESASEW EGRLQLKDDS LVESLVDSG

Sequence ? help Back to Top

Protein Sequence Length: 709 aa Download sequence

MSSYSSVNRR NYTAGHRDRR AAAPKQEWVP RGSIALSPPA NTGSVPSIVQ DIQDKLARGA  60
VECMSCYDMV RRSTPIWSCS TCFSIFHLNC IRKWARSPAC IAADDWHCPG CQTPQSTPAR  120
HLSYTCFCGR RRDPPNDQHL CPHSCGKPCG KPLDGGGKKL RCPHFCVLQC HPGPCPPCKA  180
FAPRRKCPCG KTNVVRRCSD RRAPLSCEKP CNRFLGCGRH TCERVCHNGA CGSCLELLTT  240
KCFCGKKEQE VICSDVAMKG NFDEKSRLFS CDDVCGRSLL CGNHFCRENC HPGLCGECEL  300
LPGKISTCHC GKKKIVDERM TCMDLIPTCS NVCGKPLVCK THFCRMRCHE GDCLPCSALV  360
QQRCRCGSSR RTVECYQLFD TMFKFLCERT CYRKKNCGRH RCKDRCCVLS KTGDFDPHLC  420
LLPCGKMLQC GKLTCQLPCH GGRCSPCLET ISTDITCASG MTTISTNLDA LHVGENLATS  480
DVFSDIMWRQ PKEGSGNSMK VYVFCNILME KRAALLQIAE WWKLLVQIAG WEPKSLPTVH  540
AICKSKPGFL MVAAYPPAHD PLIDMDPRCV VALPCLPMDA DISSLVLRFD RVNELVCLND  600
KNSMAVLSDP ARVATALQRL SHRFTFQGAA PAASRSNEYG NSSKWTVALE MDLTEASILV  660
WRGNHGNPVL ENANRWNLLD DVVLESASEW EGRLQLKDDS LVESLVDSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10170.1	1e-159	NF-X1 family protein