PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020679979.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Protein Properties

Length: 398aa MW: 45626.8 Da PI: 10.3132

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020679979.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	40.6	4.7e-13	12	97	2	96
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 fkv+ +++ rl++p f e+ +g+ ++ +l+++ gr+W v l r+ ++ ++++GW+ Fv++ ++ g+f++F +dg+ +f vk+ XP_020679979.2 12 FKVM--IGDFQT-RLRIPPCFHEHLSGE--ILVKSVLRSRGGRRWAVML--RREGKNLFFGEGWECFVSDLSIQLGEFLLFVYDGDLGF--DVKI 97 5666..444444.69**999666655..77899**********..*******************************98877..5555 PP
2	B3	59.9	4.3e-19	184	266	12	99
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++ +++p +f++e+++ + e ++l+d++grsW v++ ++ ++ + ++kGW +F + n+LkegD++vF++ + ++ +v++fr+ XP_020679979.2 184 RQEYMTIPASFMRECDLGSME--AIILQDQKGRSWPVRIAHWIGR--VAMAKGWAKFRDVNHLKEGDVCVFEFLE-ADTAIHVHIFRA 266 55779********777555..6***********777776..88*******************887.56668**997 PP
3	B3	59.2	7.1e-19	309	389	14	98
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +l +p + ++e++ k + tl+d+sgrsW+v +++r gr vl+ GW +F++an+L++gD+++F+l++ + + v+++r XP_020679979.2 309 YNLNIPTRVLKEYDAAKL--SKTTLRDPSGRSWSVDIKHRVD-GRAVLSHGWFNFCRANHLQVGDICIFELND-GIQAMDVHIRR 389 4589*******86653..4899*********76655.5779*********************976.44446777776 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MEKPLWERDS FFKVMIGDFQ TRLRIPPCFH EHLSGEILVK SVLRSRGGRR WAVMLRREGK 60 NLFFGEGWEC FVSDLSIQLG EFLLFVYDGD LGFDVKIYGI TGCEKVDPIA SMKVEQEEEM 120 EIREKVPAKT STALIRAPGR RREILNGRVI LGGLKVFSNE SALNSARSFK SSRPFFIATY 180 RRSRQEYMTI PASFMRECDL GSMEAIILQD QKGRSWPVRI AHWIGRVAMA KGWAKFRDVN 240 HLKEGDVCVF EFLEADTAIH VHIFRAKQNT AGVLRRAGNK KREQEVLKAE RSFRTNAIFA 300 SIFLKSRKYN LNIPTRVLKE YDAAKLSKTT LRDPSGRSWS VDIKHRVDGR AVLSHGWFNF 360 CRANHLQVGD ICIFELNDGI QAMDVHIRRL GLHAITAG

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MEKPLWERDS FFKVMIGDFQ TRLRIPPCFH EHLSGEILVK SVLRSRGGRR WAVMLRREGK  60
NLFFGEGWEC FVSDLSIQLG EFLLFVYDGD LGFDVKIYGI TGCEKVDPIA SMKVEQEEEM  120
EIREKVPAKT STALIRAPGR RREILNGRVI LGGLKVFSNE SALNSARSFK SSRPFFIATY  180
RRSRQEYMTI PASFMRECDL GSMEAIILQD QKGRSWPVRI AHWIGRVAMA KGWAKFRDVN  240
HLKEGDVCVF EFLEADTAIH VHIFRAKQNT AGVLRRAGNK KREQEVLKAE RSFRTNAIFA  300
SIFLKSRKYN LNIPTRVLKE YDAAKLSKTT LRDPSGRSWS VDIKHRVDGR AVLSHGWFNF  360
CRANHLQVGD ICIFELNDGI QAMDVHIRRL GLHAITAG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24645.1	1e-21	B3 family protein