PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020680223.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB
Protein Properties Length: 272aa    MW: 30676.3 Da    PI: 6.0604
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020680223.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.24.9e-151562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l+d++  +G g+W+ ++ + g+ R +k+c++rw +yl
   XP_020680223.1 15 KGLWSPEEDQRLKDYILNHGYGCWSEVPVKAGLERNGKSCRLRWINYL 62
                     678*******************************************97 PP
2Myb_DNA-binding53.55.4e-1768113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++l  ++++ lG++ W+ Ia +++ gRt++++k++w++yl
   XP_020680223.1  68 RGKFSQEEEDLAMKLHAVLGNK-WSQIAMHLP-GRTDNEVKNYWNTYL 113
                      89********************.*********.*************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    
MGCRGSEKAK MKCKKGLWSP EEDQRLKDYI LNHGYGCWSE VPVKAGLERN GKSCRLRWIN  60
YLRPGIKRGK FSQEEEDLAM KLHAVLGNKW SQIAMHLPGR TDNEVKNYWN TYLKKKVKKS  120
EESASAKLSD HNPSTDSSAE NYKNKQENFN KILLFDTIEP AESSSYSHGF SQQKSWPKVM  180
FADWIFGENS DGLLSLESSD GGKGLAWDSC SFDSRETLSN GDLRAMSNQE FAEGGSYVSC  240
FEPVDLIGSD SFDLLSFGGN FGGFEMNQDL MF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.19e-53MYB family protein