PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020680224.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family NF-YB
Protein Properties Length: 199aa    MW: 21875.6 Da    PI: 9.01
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020680224.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB127.54.9e-4057141197
           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                     vreqdrflP+an+srimkk+lPan+ki+kdaket+q            eas+kcqrekrktingddll a+atlGfe+y+eplk+yl+kyre+eg
  XP_020680224.1  57 VREQDRFLPVANISRIMKKALPANGKIAKDAKETTQ------------EASEKCQREKRKTINGDDLLSAMATLGFEEYIEPLKLYLQKYREMEG 139
                     69*******************************966............79********************************************* PP

           NF-YB  96 ek 97 
                     ++
  XP_020680224.1 140 DS 141
                     97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    
MLARVSEAAI WDVEVVVSDF FSFAGRRSRG GGSRFLAMAS PGDGSRENGE HSPRSNVREQ  60
DRFLPVANIS RIMKKALPAN GKIAKDAKET TQEASEKCQR EKRKTINGDD LLSAMATLGF  120
EEYIEPLKLY LQKYREMEGD SKLSTKVADN AGKREATGLQ VANQPGTSTQ VELKMPNHSS  180
FAHGMTYMQS QFHGGDLSG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.19e-55NF-YB family protein