PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020680241.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family NF-YB
Protein Properties Length: 174aa    MW: 19189.5 Da    PI: 6.9481
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020680241.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB179.62.7e-5620116197
           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                     vreqdrflP+an+srimkk+lPan+ki+kdaket+qecvsefisf+tseas+kcqrekrktingddll a+atlGfe+y+eplk+yl+kyre+eg
  XP_020680241.1  20 VREQDRFLPVANISRIMKKALPANGKIAKDAKETTQECVSEFISFITSEASEKCQREKRKTINGDDLLSAMATLGFEEYIEPLKLYLQKYREMEG 114
                     69********************************************************************************************* PP

           NF-YB  96 ek 97 
                     ++
  XP_020680241.1 115 DS 116
                     97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    
MASPGDGSRE NGEHSPRSNV REQDRFLPVA NISRIMKKAL PANGKIAKDA KETTQECVSE  60
FISFITSEAS EKCQREKRKT INGDDLLSAM ATLGFEEYIE PLKLYLQKYR EMEGDSKLST  120
KVADNAGKRE ATGLQVANQP GTSTQVELKM PNHSSFAHGM TYMQSQFHGG DLSG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.12e-68NF-YB family protein