PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020680278.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family FAR1
Protein Properties Length: 222aa    MW: 25754.1 Da    PI: 8.5769
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020680278.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR173.74.1e-2344130289
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                     ++++YA++ GFsvrk++++   ++++i++++fvCsk g++++++ + +++r +r+  +tgC a+++   ++dg w+v+++ + HnH+l
  XP_020680278.1  44 CFCTYAHDNGFSVRKDHHSFWPNSRKIKSKDFVCSKAGFKKNNDLN-SRKRFSRPDVQTGCPAMVRFVTDEDGYWHVKRFIESHNHDL 130
                     799*****************************************99.99*************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MVRSSRPISV LKTVDFWNVL WSDFWTELSG TIAVYKDETE AYECFCTYAH DNGFSVRKDH  60
HSFWPNSRKI KSKDFVCSKA GFKKNNDLNS RKRFSRPDVQ TGCPAMVRFV TDEDGYWHVK  120
RFIESHNHDL GSPAVRHLLR SCRNVVEEKA SVLKSMTDAG IRTVDAYAYL AEEVGGCENV  180
RFSKRDAYNF IQKEKRARIE IGDTNSLIQL FKDLQVEDRM FA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-18FAR1 family protein