PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020680377.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB_related
Protein Properties Length: 163aa    MW: 18798.8 Da    PI: 12.0419
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020680377.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.1e-0943761045
                     HHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding 10 ellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     ++l+ a+ ++G++ W++Iar +  gRt++++ ++++
   XP_020680377.1 43 KRLLSAHWLYGNK-WALIARLFL-GRTDNDVNNHLH 76
                     699**********.********9.**********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    
MVYRVTILFV VLLVSFLCKL PTSRWFNQTQ VLTRRPSRRR KRKRLLSAHW LYGNKWALIA  60
RLFLGRTDND VNNHLHVIIA RRHMELSNAI RRRKPSNSIS SFSSAIAFDK GLQVIYCNNA  120
CIVESTISSN RDESLSSGTG LSLDFSQYKA RSSLSIPRQR SRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13844RRRKRKR
23944RRKRKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26780.15e-18MYB family protein