PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020680391.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 203aa MW: 23543.7 Da PI: 7.9755

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020680391.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.3	1.3e-16	21	68	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++lv +++++G +W+ ++ g+ R++k+c++rw +yl XP_020680391.1 21 RGAWTAAEDKKLVAYITMHGHTNWRNLPKQAGLLRCGKSCRLRWINYL 68 89****************************99**********97 PP
2	Myb_DNA-binding	52	1.6e-16	74	118	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eE++ ++ ++ +lG++ W++Ia++++ gRt++++k+ w+++ XP_020680391.1 74 RGNFTKEEEDTIISLHSELGNK-WSKIASYLP-GRTDNEIKNLWHTH 118 89******************.*****.*********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence
MARKGERRGR QPCCEKEGLK RGAWTAAEDK KLVAYITMHG HTNWRNLPKQ AGLLRCGKSC 60 RLRWINYLRP DVKRGNFTKE EEDTIISLHS ELGNKWSKIA SYLPGRTDNE IKNLWHTHIK 120 KKIAQGEASS SSSSKQESYE IKPNQSIILH EYNSAEELSS SQMLWREELN GVMDFMMMPE 180 EDEGYYNGLV YLESEIDLWG QMN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	8e-67	MYB family protein