PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020680393.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HD-ZIP

Protein Properties

Length: 234aa MW: 25842.5 Da PI: 9.6334

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020680393.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.8	8e-18	85	139	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Le+ F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k XP_020680393.1 85 RKKLRLTKEQSALLEDRFNEHSTLNPKQKLALAKQLSLRPRQVEVWFQNRRARTK 139 78889************************************************98 PP
2	HD-ZIP_I/II	123.9	7.5e-40	85	173	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+keq++lLE+ F+e+++L+p++K +la++L l+prqv+vWFqnrRARtk+kq+E+d+e+L+r++++l+een+rL+ e +eLr + XP_020680393.1 85 RKKLRLTKEQSALLEDRFNEHSTLNPKQKLALAKQLSLRPRQVEVWFQNRRARTKLKQTEVDCEFLRRCCESLTEENRRLHGELQELR-S 173 69*************************************************************************************9.4 PP

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence
MGVVDDPSET GLLLLRLGRT GQTAFTANHH RLVRRDSSAK SKPSVLSSSG PSLTLGFSNG 60 AVKKESDGDG SDEEEDGGGG GDGSRKKLRL TKEQSALLED RFNEHSTLNP KQKLALAKQL 120 SLRPRQVEVW FQNRRARTKL KQTEVDCEFL RRCCESLTEE NRRLHGELQE LRSLKLAAAT 180 QLSMQVPPAT LMLCPSCERV AVVGEADDVV MERAFSPAMK AMMKKKSTLL LKYS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	84	90	SRKKLRL
2	134	142	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	2e-52	HD-ZIP family protein