PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020680459.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

HD-ZIP

Protein Properties

Length: 240aa MW: 27601.7 Da PI: 10.9707

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020680459.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	49.6	6.6e-16	15	60	12	57
HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++ Le+ e ++++ e++ +LAkklgL+ rqV vWFqNrRa++kk XP_020680459.1 15 VQLLERSIEIENKLEPERKSDLAKKLGLQPRQVAVWFQNRRARWKK 60 57899999999**********************************8 PP
2	HD-ZIP_I/II	112.6	2.5e-36	14	97	10	93
HD-ZIP_I/II 10 qvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 v+lLE+s e e+kLeperK++la++LglqprqvavWFqnrRAR+k+kqlE+d+++Lk++y+al +++++L k++++Lr+++++ XP_020680459.1 14 RVQLLERSIEIENKLEPERKSDLAKKLGLQPRQVAVWFQNRRARWKKKQLERDFDRLKSSYEALLADHDSLFKDNDRLRSQVRS 97 5899****************************************************************************9976 PP

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence
MHAGNLKITG SYFRVQLLER SIEIENKLEP ERKSDLAKKL GLQPRQVAVW FQNRRARWKK 60 KQLERDFDRL KSSYEALLAD HDSLFKDNDR LRSQVRSLSL TDDFTAAPPF FDAAPPFFKA 120 VGVKGKVVGD GNVGGKQQKA GVYFRTEKVA VGRKKFENGA RPRLFDIAPW TTFPSSRIGS 180 QNILVGSNDG SSLAVKIKFF PFVRFFVAIR LHSLDNVPFH SDWKLQHFDQ KQRRKFARCE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	54	62	RRARWKKKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	2e-39	HD-ZIP family protein