PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020680523.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MIKC_MADS
Protein Properties Length: 247aa    MW: 28456 Da    PI: 9.4001
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020680523.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.42.9e-312978150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva++ifss+g+lyey+
  XP_020680523.1 29 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSSRGRLYEYA 78
                    79***********************************************8 PP
2K-box107.81.2e-3596192399
           K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                     +s++ s +ea+++++qqe++kL+++i nLq+++R+llG+ L+++sl++L+qLe++Lek+++kiRskKnell+++i+++qk+e +lq +n++Lr+k
  XP_020680523.1  96 NSNSGSISEANSQYYQQEATKLRQQITNLQNSNRNLLGDALTTMSLRDLKQLETRLEKGINKIRSKKNELLHAEIDYMQKREMDLQTDNMYLRNK 190
                     44445599**************************************************************************************9 PP

           K-box  98 le 99 
                     + 
  XP_020680523.1 191 IS 192
                     96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MFASSQPGNI ESSNMEPKEK MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD  60
AEVALVIFSS RGRLYEYANN SVKGTIDRYK KANSDNSNSG SISEANSQYY QQEATKLRQQ  120
ITNLQNSNRN LLGDALTTMS LRDLKQLETR LEKGINKIRS KKNELLHAEI DYMQKREMDL  180
QTDNMYLRNK ISDNERAQQH QHMNILPSTS AEYEVMPPFD SRSFLQVNLL DPNDHYAHQQ  240
QTALQLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-110MIKC_MADS family protein