PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020680533.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

C2H2

Protein Properties

Length: 350aa MW: 38903.4 Da PI: 6.2558

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020680533.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.0006	5	26	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++C++ F++ +L H+r+H XP_020680533.1 5 FCKICKRAFPNGRSLGGHMRSH 26 6********************9 PP
2	zf-C2H2	13.1	0.00029	258	280	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp+C k+F++ L H r+H XP_020680533.1 258 YECPICAKVFPSGQALGGHKRSH 280 99******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
METHFCKICK RAFPNGRSLG GHMRSHIMTK SSFNSKGSSE SRYGLREKPK KSRWFDDEDV 60 ELEEKETWST GVDDDQEEEL EVITECKEPR NKRQGMRLKL VEAISASSSP APSSPEYGAM 120 CLMMLSRDAG SFSDGNEVKR SESDILKIGI KKVDPFPSES GFHIGDDDDD EAEFKEDVNF 180 ASVFESGNTR KSRKRYFAAG IENFSKRSKY ECASCNKSFH SYQALGGHCA SHKKIRVDSS 240 SVLAAVAENL ISQKFRSYEC PICAKVFPSG QALGGHKRSH LIAGNSAASA ATVSAAVIEI 300 EQKNSELNSL DLNLPASDYE ICDSFDSNRS IEEKKFTAFQ ESSRFAAFMM

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

METHFCKICK RAFPNGRSLG GHMRSHIMTK SSFNSKGSSE SRYGLREKPK KSRWFDDEDV  60
ELEEKETWST GVDDDQEEEL EVITECKEPR NKRQGMRLKL VEAISASSSP APSSPEYGAM  120
CLMMLSRDAG SFSDGNEVKR SESDILKIGI KKVDPFPSES GFHIGDDDDD EAEFKEDVNF  180
ASVFESGNTR KSRKRYFAAG IENFSKRSKY ECASCNKSFH SYQALGGHCA SHKKIRVDSS  240
SVLAAVAENL ISQKFRSYEC PICAKVFPSG QALGGHKRSH LIAGNSAASA ATVSAAVIEI  300
EQKNSELNSL DLNLPASDYE ICDSFDSNRS IEEKKFTAFQ ESSRFAAFMM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02030.1	2e-27	C2H2 family protein