PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020680534.2

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

FAR1

Protein Properties

Length: 540aa MW: 62430.4 Da PI: 9.6667

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020680534.2	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	29.4	2.6e-09	24	79	47	90
FAR1 47 k............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 + + k++ ++++trtgC a+++ + ++dg+w+v+k++++Hn ela XP_020680534.2 24 RggdasfkkgldlNAKSKYRKSNTRTGCPAMIRFSVDQDGEWKVNKCVENHNQELA 79 34444444455555677889999*****************************9996 PP

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence
MDTVPKEMND WLEMEGFMQE SQLRGGDASF KKGLDLNAKS KYRKSNTRTG CPAMIRFSVD 60 QDGEWKVNKC VENHNQELAR PEDQHLLRSC RSITEERAFI LKSMTDAGIR TIDAFTYLAD 120 EVGGREHVGF LRRDAYNFVL RNRRCKIETG DTNSLIEIFK NRANSDNIYR LNKYNLACAP 180 FVGVNNHWKN VLLGVAFLSE ETVESFTWLF RTFLRVMGGK HPITIFTDQD QAMSRAIEIA 240 FPQTRHRLCK WHITKKLPSK LHCYNNNNKV RGLIYKCFSK CDSEKEFEST WTEMLNEGDF 300 HSHEWLKELY KIRHKWSTAY NKTYFNLGIL STHRSESTNN VCHRISKSTR TITECFLELE 360 KVMKTWRRNE KDEDFKCSQS DVVPLVKSSP ILRQAACGKF GMMGILCSHF LRVIRKIDII 420 NIPPKYLLKR WSGGARKDLY SDRRLSSMVA TGIPSDGIGS MIFRNYFSSF AYQISTRGQG 480 NTEAEQYMID AISEIAENVD LILNASKDSN LVTNLSMRTK IKDPINRRPK GVSNARLKSH

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence

MDTVPKEMND WLEMEGFMQE SQLRGGDASF KKGLDLNAKS KYRKSNTRTG CPAMIRFSVD  60
QDGEWKVNKC VENHNQELAR PEDQHLLRSC RSITEERAFI LKSMTDAGIR TIDAFTYLAD  120
EVGGREHVGF LRRDAYNFVL RNRRCKIETG DTNSLIEIFK NRANSDNIYR LNKYNLACAP  180
FVGVNNHWKN VLLGVAFLSE ETVESFTWLF RTFLRVMGGK HPITIFTDQD QAMSRAIEIA  240
FPQTRHRLCK WHITKKLPSK LHCYNNNNKV RGLIYKCFSK CDSEKEFEST WTEMLNEGDF  300
HSHEWLKELY KIRHKWSTAY NKTYFNLGIL STHRSESTNN VCHRISKSTR TITECFLELE  360
KVMKTWRRNE KDEDFKCSQS DVVPLVKSSP ILRQAACGKF GMMGILCSHF LRVIRKIDII  420
NIPPKYLLKR WSGGARKDLY SDRRLSSMVA TGIPSDGIGS MIFRNYFSSF AYQISTRGQG  480
NTEAEQYMID AISEIAENVD LILNASKDSN LVTNLSMRTK IKDPINRRPK GVSNARLKSH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-57	FAR1 family protein