PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020680557.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

CO-like

Protein Properties

Length: 395aa MW: 42385.6 Da PI: 5.8093

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020680557.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.2	7.2e-08	19	61	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38 +r C+ + + +++++C ++ +lC+ C + +H+ H+ XP_020680557.1 19 ARACDSCIRRRARWYCAADDAFLCQPCDSLIHSAnplarrhHR 61 578*****************************65777777555 PP
2	CCT	68.8	1.4e-23	330	373	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a XP_020680557.1 330 REARVTRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 373 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MSHYSDKSRP AAAVGGKTAR ACDSCIRRRA RWYCAADDAF LCQPCDSLIH SANPLARRHH 60 RLRLRSSSAT TAKAAAPAWH YGFKRKARTP RSHQKPVVPE LESSVEDEEE EEQLLYRVPV 120 LDPVLSFGDT APRSQPQEEA AAASAAGVGA EFAPTEIELA EFAANMESLL GRGLDGGEAF 180 CMEELGLGES SSGSGGSGGG GGARMEVDVK GEMEEEAGKG EGLSFEMEVD LSRETLELDF 240 GCGSSEMKEE AATVEAAAVA EEKEVSKGMG LKLDYEAVKS AWLLTGSTPW MTGERPRLGA 300 DDCWLDCLGM WGGVGGEFVG GGIQALDVGR EARVTRYREK RRTRLFSKKI RYEVRKLNAE 360 KRPRMKGRFV KRASFPATSA AGGSGSTGGA AALAY

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MSHYSDKSRP AAAVGGKTAR ACDSCIRRRA RWYCAADDAF LCQPCDSLIH SANPLARRHH  60
RLRLRSSSAT TAKAAAPAWH YGFKRKARTP RSHQKPVVPE LESSVEDEEE EEQLLYRVPV  120
LDPVLSFGDT APRSQPQEEA AAASAAGVGA EFAPTEIELA EFAANMESLL GRGLDGGEAF  180
CMEELGLGES SSGSGGSGGG GGARMEVDVK GEMEEEAGKG EGLSFEMEVD LSRETLELDF  240
GCGSSEMKEE AATVEAAAVA EEKEVSKGMG LKLDYEAVKS AWLLTGSTPW MTGERPRLGA  300
DDCWLDCLGM WGGVGGEFVG GGIQALDVGR EARVTRYREK RRTRLFSKKI RYEVRKLNAE  360
KRPRMKGRFV KRASFPATSA AGGSGSTGGA AALAY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	341	357	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	2e-43	CO-like family protein