PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020680574.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 186aa MW: 20761.3 Da PI: 9.3398

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020680574.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.9	6.2e-20	8	53	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W+ eEd +l+++v+q+G+++W+ I ++++ gR++k+c++rw + XP_020680574.1 8 RGTWSSEEDAKLKELVEQHGPRNWSVICKEIP-GRSGKSCRLRWCNQ 53 89****************************.*********985 PP
2	Myb_DNA-binding	50	6.7e-16	62	102	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++T eE ++++a +++G++ W+tIar ++ gRt++ +k++w+ XP_020680574.1 62 PFTVEENNIIARAQERYGNK-WATIARLLP-GRTDNAIKNHWN 102 89****************.*****.*********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence
MDEDGVIRGT WSSEEDAKLK ELVEQHGPRN WSVICKEIPG RSGKSCRLRW CNQLSPDVEH 60 RPFTVEENNI IARAQERYGN KWATIARLLP GRTDNAIKNH WNCTLRRLKR TSASSLSDLE 120 VEVDEKKRAR GKNVMMEKDQ DPITILSLSL PGGGGGAGGG GLKGEEKKDS GDGFFGRSDR 180 EGRRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	3e-53	MYB family protein