PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020680641.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family MYB
Protein Properties Length: 297aa    MW: 33767.1 Da    PI: 6.3994
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020680641.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.14.3e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv +v+++G+g+W++++   g+ R+ k+c++rw +yl
   XP_020680641.1 14 KGPWTPEEDIILVSYVQEHGPGNWRLVPTNSGLMRCSKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding48.12.6e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++   E+e+++++ ++lG++ W++Ia++++  Rt++++k++w+++l
   XP_020680641.1  67 RGNFNSHEEEIIIQLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                      899*******************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
MGRSPCCDKT GIKKGPWTPE EDIILVSYVQ EHGPGNWRLV PTNSGLMRCS KSCRLRWTNY  60
LRPGIKRGNF NSHEEEIIIQ LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKIKTFQ  120
AARSNYITSS DSAGSTIQER VHGGYPIEEI RNSGTSNSHI LAHNSSTYAS SAENISRLLE  180
GWMRSSPSQT LSDEKLQHQM INNYDSFIMN QLNFNVEINS QLLLEDSVNG VDKTALDSVF  240
EEKKQFKMVA SDLNKLESQS QQPPMFMLEK WLLEENTGLM DAFLELSSAD CCSELMF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.12e-96MYB family protein