PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020680660.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

AP2

Protein Properties

Length: 347aa MW: 39167.1 Da PI: 5.9

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020680660.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	46.1	1.2e-14	48	107	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse...ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d s+ + k ++++lg ++ +e Aa ++ a++k++g XP_020680660.1 48 SIYRGVTRHRWTGRYEAHLWDkNSWnlmHNkKGRQVYLGAYDDEEAAAHTYDLAALKYWG 107 57*****************888866644455***********************98 PP
2	AP2	53.3	6.7e-17	150	202	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+y+GV +++ +grW+A+I g +k+ +lg+f t eeAa+a++ a+++++g+ XP_020680660.1 150 SKYRGVARHHHNGRWEARIGRiH---G-NKYLYLGTFSTQEEAAQAYDMAALEYRGP 202 89**99******98844...3.6************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MEKSNSSFSS PSPPPISKPR HKRSKNAHAI TDKNNVGGST SACGKRSSIY RGVTRHRWTG 60 RYEAHLWDKN SWNLMHNKKG RQVYLGAYDD EEAAAHTYDL AALKYWGPDT VLNFPANTYL 120 KEFEEMQSMS KEEYLATLRR RSSGFSRGVS KYRGVARHHH NGRWEARIGR IHGNKYLYLG 180 TFSTQEEAAQ AYDMAALEYR GPNAVTNFNT SYYTSHPPPS PMPMLEPNYS MIMPSPSSLK 240 SLDKELSDII NIQVPDDFGD LLWSDMENKE FDSSQEVNFE ETNNLHDLFD CVGFEENIEH 300 LFEGIDYDNG NIDNNNDDGG GGLAEERASS STLNSAASYP PPVSIYS

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MEKSNSSFSS PSPPPISKPR HKRSKNAHAI TDKNNVGGST SACGKRSSIY RGVTRHRWTG  60
RYEAHLWDKN SWNLMHNKKG RQVYLGAYDD EEAAAHTYDL AALKYWGPDT VLNFPANTYL  120
KEFEEMQSMS KEEYLATLRR RSSGFSRGVS KYRGVARHHH NGRWEARIGR IHGNKYLYLG  180
TFSTQEEAAQ AYDMAALEYR GPNAVTNFNT SYYTSHPPPS PMPMLEPNYS MIMPSPSSLK  240
SLDKELSDII NIQVPDDFGD LLWSDMENKE FDSSQEVNFE ETNNLHDLFD CVGFEENIEH  300
LFEGIDYDNG NIDNNNDDGG GGLAEERASS STLNSAASYP PPVSIYS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.1	5e-87	AP2 family protein