PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020680679.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family HSF
Protein Properties Length: 303aa    MW: 33337.5 Da    PI: 8.7584
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020680679.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.75.1e-35211142103
                     HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
    HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                     Fl+k+y++++d+++++++sw  ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  e+         weF+++ F+kg+k+ll+
  XP_020680679.1  21 FLTKTYQLVDDPSTNHIVSWGdDRVSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKVVPER---------WEFANEFFRKGEKNLLC 106
                     9********************6667*****************************************999.........***************** PP

                     XXXXXXXX CS
    HSF_DNA-bind  96 kikrkkse 103
                     +i+r+k++
  XP_020680679.1 107 EIHRRKTS 114
                     *****986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MLDRNWEAGG GETAQAMPAP FLTKTYQLVD DPSTNHIVSW GDDRVSTFVV WRPPEFARDL  60
LPNYFKHNNF SSFVRQLNTY GFRKVVPERW EFANEFFRKG EKNLLCEIHR RKTSAAAVAA  120
ASSLQPSFSP LFQTPFEDYY SAPAAAKRLF LLGNVSEAAA IGGSAPALLE ENEQLRRSNA  180
ALMSELAHMR RLYNDIIYFV QNHVRPVGPS GSFYELRRGA AGLNSGGSAT SSSSLTIADQ  240
DPSARPDGKD SESSGSPTKL FGVSICAKRR EYPGEAASSS TKLRLGLNKE CLGLNQMPPS  300
PSM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-89HSF family protein