PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020680696.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family bHLH
Protein Properties Length: 157aa    MW: 17334.3 Da    PI: 10.7813
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020680696.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH277.9e-0986127854
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     + r+RR+ri +++  L++l+P       +K++ a++L +A+ Y+k L
  XP_020680696.1  86 AARQRRERIGERIRILQQLVPGG-----TKMDTASMLDEAICYLKFL 127
                     569******************87.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    
MDSAPEFQQN RIPVYGLPTE FLQPALPPPA NLYPLTPLTC SNHAMGAMKE IIYGLAALQP  60
VQINLDLVKV RPRRNVRISK DPQSVAARQR RERIGERIRI LQQLVPGGTK MDTASMLDEA  120
ICYLKFLKAQ VRKMETTTAG GQRRAAVAIA GGQGLRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18893RQRRER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.12e-29bHLH family protein