PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_020680706.1
Organism
Dendrobium catenatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium
Family ZF-HD
Protein Properties Length: 222aa    MW: 25089.4 Da    PI: 8.3487
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_020680706.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer92.44.1e-2955110359
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                     +++Y+eClkNhAas Gg+a+DGCgEfmp  g++g  +al+C+ CgCHRnFHR+ ve 
  XP_020680706.1  55 STKYRECLKNHAASFGGNATDGCGEFMPG-GADGMLEALNCSVCGCHRNFHRKAVEG 110
                     579*************************9.999********************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MDLSDQEEED VQVVCSHSMI NQTSLNGASL FSFAGKKENH QRRSHHSCKT VAAASTKYRE  60
CLKNHAASFG GNATDGCGEF MPGGADGMLE ALNCSVCGCH RNFHRKAVEG EPFSSSSNSM  120
DHCLHFHSYI MPRPVAMMPP LLPPSEMPED KKKRLRTRFT AEQKEKMARF AEKVGWKLQR  180
HEEDVGNFCE EIGIKRRVLK VWMHNNKHNF AQKNSTVTTK FD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.12e-57ZF-HD family protein