PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020680750.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

MYB

Protein Properties

Length: 224aa MW: 26083 Da PI: 7.7097

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020680750.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.8	5.3e-18	14	59	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l+++v+++G+ +W++Ia++++ gR++k+c++rw++ XP_020680750.1 14 RGHWRPAEDEKLKQLVEEFGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 59 899***************************.*********996 PP
2	Myb_DNA-binding	57	4.4e-18	66	109	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l+ a+ +G++ W++Iar ++ gRt++ +k++w+ XP_020680750.1 66 RRPFTEEEEERLLAAHGFHGNK-WALIARLFP-GRTDNAVKNHWHV 109 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence
MAADKPEENK LCPRGHWRPA EDEKLKQLVE EFGPQNWNSI AEKLQGRSGK SCRLRWFNQL 60 DPRINRRPFT EEEEERLLAA HGFHGNKWAL IARLFPGRTD NAVKNHWHVI MARRQREKTK 120 FLTNQSSFHE EDHSHIFNQA ETSCSISSNQ LNHYEYNYGN LGSSHHPLQK LSNSSTIYWR 180 FGVLEEHRGC LRDASGGVNK EEKDDETLRS KDVPYIDFLG VGKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17950.1	3e-67	MYB family protein