PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020680835.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

NAC

Protein Properties

Length: 672aa MW: 75836.8 Da PI: 7.1015

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020680835.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	91.7	1.2e-28	57	199	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tk 79 lp+G++F+Ptd el+ e+L+ +v + + ++e+i+++d i++++P++Lp vk++ ++ +fF++++++yatg +k+r+ + XP_020680835.1 57 LPAGVKFDPTDVELL-EHLAGNVGAGMskahIFIDEFIPTLDgdqgICYTHPENLP-GVKKDGSSAHFFHRTSNAYATGCKKRRKirneysesEE 149 799**********.899999887773444333445666656677******.67788899**************985666666555 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+k+v++ +g l+g kk++v+y g+ k+ k +Wvmh+y+l XP_020680835.1 150 RVRWHKTGKTKPVVE-SGVLKGWKKIMVLYrsLGKGCKPDKDNWVMHQYHL 199 889********.999*******5447888999*******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 672 aa Download sequence
MARAWLINSR GIAKKVKNAA LYSNYQIRDL GTEANRECPN CKYVIDNSDV SLDWPGLPAG 60 VKFDPTDVEL LEHLAGNVGA GMSKAHIFID EFIPTLDGDQ GICYTHPENL PGVKKDGSSA 120 HFFHRTSNAY ATGCKKRRKI RNEYSESEER VRWHKTGKTK PVVESGVLKG WKKIMVLYRS 180 LGKGCKPDKD NWVMHQYHLG TNEDEKDGEL VVSKVFYQQH TKHVGSGEAE ILPDELDSSN 240 IKNCPRTPKT TAPQPPRFKM NSLREADQHD HLPLPVQEKR PEEESMPSPF PIICLKDEHN 300 GSACWADESQ AIQEPETEKI YESLLCHEVL FPFTSIGGSS PQFDHLEIAD GNKEQLKRDA 360 NTDDGFSCLE DIDIDTPSDF HLSMRNLGSL NQFLGIHAVK TNSGILLHQQ HYAKAIVERA 420 GMTQSKPVST PIACKITTSS TSQEPFSNPQ LYRHIIGSLQ YLTPTRPDIQ FAVHQLCQHM 480 QHPLNQHFDA LKRLLRFING TTNTGIQFHS QDLTLRGYVD ADWASNSLDR KSISGHCHFM 540 GNSLISWQVK KQNTIARSST EAEYRALAFA TAEIIWLRQL LEDFHIPQTN PTVIYCDNTS 600 AIALANNPVF YARTKHIEVD CHFIREHIRN KIITVHHICS ADQLADFFTK ALPTTRFQLM 660 ANKLTAALQP QV

Sequence ? help Back to Top

Protein Sequence Length: 672 aa Download sequence

MARAWLINSR GIAKKVKNAA LYSNYQIRDL GTEANRECPN CKYVIDNSDV SLDWPGLPAG  60
VKFDPTDVEL LEHLAGNVGA GMSKAHIFID EFIPTLDGDQ GICYTHPENL PGVKKDGSSA  120
HFFHRTSNAY ATGCKKRRKI RNEYSESEER VRWHKTGKTK PVVESGVLKG WKKIMVLYRS  180
LGKGCKPDKD NWVMHQYHLG TNEDEKDGEL VVSKVFYQQH TKHVGSGEAE ILPDELDSSN  240
IKNCPRTPKT TAPQPPRFKM NSLREADQHD HLPLPVQEKR PEEESMPSPF PIICLKDEHN  300
GSACWADESQ AIQEPETEKI YESLLCHEVL FPFTSIGGSS PQFDHLEIAD GNKEQLKRDA  360
NTDDGFSCLE DIDIDTPSDF HLSMRNLGSL NQFLGIHAVK TNSGILLHQQ HYAKAIVERA  420
GMTQSKPVST PIACKITTSS TSQEPFSNPQ LYRHIIGSLQ YLTPTRPDIQ FAVHQLCQHM  480
QHPLNQHFDA LKRLLRFING TTNTGIQFHS QDLTLRGYVD ADWASNSLDR KSISGHCHFM  540
GNSLISWQVK KQNTIARSST EAEYRALAFA TAEIIWLRQL LEDFHIPQTN PTVIYCDNTS  600
AIALANNPVF YARTKHIEVD CHFIREHIRN KIITVHHICS ADQLADFFTK ALPTTRFQLM  660
ANKLTAALQP QV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	135	139	KKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01600.1	1e-81	NAC family protein