PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020680906.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

G2-like

Protein Properties

Length: 349aa MW: 39196.3 Da PI: 7.1792

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020680906.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.2	1.9e-33	33	87	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLH+rFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl XP_020680906.1 33 KPRLRWTVELHDRFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 87 79****************************************************8 PP
2	Myb_DNA-binding	70.9	2.1e-22	35	86	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r+rWT e+++++vdav+qlGg+ t+ktI+r mg kg+tl+++ks++qk++ XP_020680906.1 35 RLRWTVELHDRFVDAVTQLGGPdkaTPKTIMRVMGvKGLTLYHLKSHLQKFR 86 89************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MFPSKKPTMN SHEAGPLSCV QGDSGLVLTT DPKPRLRWTV ELHDRFVDAV TQLGGPDKAT 60 PKTIMRVMGV KGLTLYHLKS HLQKFRLGKQ PHKDFNDHSK DALDMQRIGA SSSGTMGRSM 120 TDRNAQTAEA LRMQLEVQRR LHEQLEVQKS LQMRIEAQGK YMQSILEKAC QTLAACENMQ 180 SSTDAYKAFN SHGSIQIDLM KDMASPMAIT FPSLQDINLF NNNQLDHHMN HQEDTSFFRS 240 NNDNNIFLGK KRQHDFYSNQ SGKSPMIWTD QDQFGSGQED SCKSEQIHEI STSVINGSLD 300 MESMMEVYEA TPMVSGDQEC RKAPVLTKEM MSPVIRGGGL SQGRNLSYG

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MFPSKKPTMN SHEAGPLSCV QGDSGLVLTT DPKPRLRWTV ELHDRFVDAV TQLGGPDKAT  60
PKTIMRVMGV KGLTLYHLKS HLQKFRLGKQ PHKDFNDHSK DALDMQRIGA SSSGTMGRSM  120
TDRNAQTAEA LRMQLEVQRR LHEQLEVQKS LQMRIEAQGK YMQSILEKAC QTLAACENMQ  180
SSTDAYKAFN SHGSIQIDLM KDMASPMAIT FPSLQDINLF NNNQLDHHMN HQEDTSFFRS  240
NNDNNIFLGK KRQHDFYSNQ SGKSPMIWTD QDQFGSGQED SCKSEQIHEI STSVINGSLD  300
MESMMEVYEA TPMVSGDQEC RKAPVLTKEM MSPVIRGGGL SQGRNLSYG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	1e-108	G2-like family protein