PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_020681428.1

Organism

Dendrobium catenatum

Taxonomic ID

906689

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Malaxideae; Dendrobiinae; Dendrobium

Family

Trihelix

Protein Properties

Length: 711aa MW: 77115.5 Da PI: 5.5101

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_020681428.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	97.7	1e-30	111	195	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r+em+ ++r++ lk+plWe+vs+k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++s +++f+qlea XP_020681428.1 111 RWPRQETLALLKVRSEMDAAFRDATLKGPLWEDVSRKLAELGYKRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFSQLEA 195 8*******************************************************************866665..*****85 PP
2	trihelix	104.4	8.3e-33	461	546	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k evlaLi++r+e++ r+ ++ k+plWee+s m++ g++rs+k+Ckekwen+nk++kk+keg+kkr +e+ +tcpyf++l+a XP_020681428.1 461 RWPKAEVLALIKLRSELDMRYLEAGPKGPLWEEISLGMKRLGYNRSAKRCKEKWENINKYFKKVKEGNKKR-PEDAKTCPYFHELDA 546 8*******************************************************************8.99999******85 PP

Sequence ? help Back to Top
Protein Sequence Length: 711 aa Download sequence
MQQQGGSQYG VPPLEMVPQF SSASAGARQP RMIGIHGGAD HIQHHPAAEA VSPISSRSVP 60 QSQAGVSRSP ATFFDELGSG GSGGAVTRSF ADEEALAAGD EGERGGSVGS RWPRQETLAL 120 LKVRSEMDAA FRDATLKGPL WEDVSRKLAE LGYKRSAKKC KEKFENVHKY YKRTKEGRAG 180 RQDGKSYRFF SQLEALHSAT ATPATVSLFS SASKTADASV PSGSSMAAPP ADRIQPPPPQ 240 LSALGPDMPP IAAAAGISFS SNTSSSSSSD SDEDTDDGGA GDGSRKRKRE GWPCGRGKTM 300 AFFEGLMKQL MEQQEAMQQR FLETIEKREQ DRMFREEAWK RQEMARLNRE YELMAQERTM 360 TANRDAAVIS FLQKFTGGVT NPPNPLLEVA TVSAPAAHEP SPPPQEDLPE SQRSQQGNEI 420 VIHQPSVSSE PTASAAEVAL EVVADACPDV VSLSKPSPSA RWPKAEVLAL IKLRSELDMR 480 YLEAGPKGPL WEEISLGMKR LGYNRSAKRC KEKWENINKY FKKVKEGNKK RPEDAKTCPY 540 FHELDALYRR KQQQESAPTT NPAPLISAPA EQESYIGDHK NPVTVRTNIG NGGNHEGSGF 600 QMPRSNANGL SQVFFGGGPN SGSDAALKKP EDIVKELMEQ QNHEDDDDDV DDDDYDDDDE 660 EDDSKMRYEI QFQRQSVGAA GGSHGGGNAA GKAPTPAPPT SNAGSFLAMV Q

Sequence ? help Back to Top

Protein Sequence Length: 711 aa Download sequence

MQQQGGSQYG VPPLEMVPQF SSASAGARQP RMIGIHGGAD HIQHHPAAEA VSPISSRSVP  60
QSQAGVSRSP ATFFDELGSG GSGGAVTRSF ADEEALAAGD EGERGGSVGS RWPRQETLAL  120
LKVRSEMDAA FRDATLKGPL WEDVSRKLAE LGYKRSAKKC KEKFENVHKY YKRTKEGRAG  180
RQDGKSYRFF SQLEALHSAT ATPATVSLFS SASKTADASV PSGSSMAAPP ADRIQPPPPQ  240
LSALGPDMPP IAAAAGISFS SNTSSSSSSD SDEDTDDGGA GDGSRKRKRE GWPCGRGKTM  300
AFFEGLMKQL MEQQEAMQQR FLETIEKREQ DRMFREEAWK RQEMARLNRE YELMAQERTM  360
TANRDAAVIS FLQKFTGGVT NPPNPLLEVA TVSAPAAHEP SPPPQEDLPE SQRSQQGNEI  420
VIHQPSVSSE PTASAAEVAL EVVADACPDV VSLSKPSPSA RWPKAEVLAL IKLRSELDMR  480
YLEAGPKGPL WEEISLGMKR LGYNRSAKRC KEKWENINKY FKKVKEGNKK RPEDAKTCPY  540
FHELDALYRR KQQQESAPTT NPAPLISAPA EQESYIGDHK NPVTVRTNIG NGGNHEGSGF  600
QMPRSNANGL SQVFFGGGPN SGSDAALKKP EDIVKELMEQ QNHEDDDDDV DDDDYDDDDE  660
EDDSKMRYEI QFQRQSVGAA GGSHGGGNAA GKAPTPAPPT SNAGSFLAMV Q

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	154	162	KRSAKKCKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	1e-114	Trihelix family protein